Browse Element(s) Details


OsAffx.31540.2.S1_s_at

Description tigr:9639.m00055
TID=OsAffx.31540.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0154011/11expressed protein
LOC_Os12g0154010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01480Os.18448.1.S1_s_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01480OsAffx.30765.1.S1_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01490Os.28272.2.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_x_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01500NANA11+290960..291905hypothetical protein
LOC_Os11g01510Os.5283.1.S1_at11/1111+294669..300588Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os11g01520NANA11+301445..301804hypothetical protein
LOC_Os11g01530OsAffx.30767.1.S1_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.4.S1_s_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.3.S1_x_at1/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01540OsAffx.31540.2.S1_s_at11/1111+307804..309616expressed protein
LOC_Os11g01540OsAffx.31540.2.S1_at10/1111+307804..309616expressed protein
LOC_Os11g01550Os.56072.1.S1_at7/1111+313616..314451LOB domain protein 12, putative, expressed
LOC_Os11g01570Os.6019.1.S1_at11/1111+328051..331822expressed protein
LOC_Os11g01580OsAffx.11747.1.S1_x_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01580OsAffx.11747.1.S1_at11/1111+333096..334289Sodium/calcium exchanger protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31540.2.S1_s_at--471--772Chr12:324090..324431 (25 bp)
ATGTCGAGAGTTGCCTTGCTATGAG
LOC_Os12g01540
OsAffx.31540.2.S1_s_at--30--6072Chr12:324414..324438 (25 bp)
GAGTTGCCTTGCTATGAGATATGAA
LOC_Os12g01540
OsAffx.31540.2.S1_s_at--169--6052Chr12:324429..324453 (25 bp)
GAGATATGAAGCTCTGCTCCTGAGA
LOC_Os12g01540
OsAffx.31540.2.S1_s_at--317--672Chr12:324434..324458 (25 bp)
ATGAAGCTCTGCTCCTGAGACAAGC
LOC_Os12g01540
OsAffx.31540.2.S1_s_at--747--8992Chr12:324495..324519 (25 bp)
TGAAGAATGGCTAACTTTTGCAAAG
LOC_Os12g01540
OsAffx.31540.2.S1_s_at--919--8112Chr12:324519..324543 (25 bp)
GGACTCTCTTGATAATGGTTTTTAC
LOC_Os12g01540
OsAffx.31540.2.S1_s_at--878--7872Chr12:324535..324559 (25 bp)
GGTTTTTACACCATTGCTTCCAAGG
LOC_Os12g01540
OsAffx.31540.2.S1_s_at--575--4911Chr11:308634..309147 (25 bp)
GCTTCCAAGGCTTTTGCAAATGCTC
LOC_Os11g01540
OsAffx.31540.2.S1_s_at--1079--8112Chr12:325120..325144 (25 bp)
GGACTCAACCAATTCTATTCTGAAG
LOC_Os12g01540
OsAffx.31540.2.S1_s_at--205--9772Chr12:325164..325188 (25 bp)
TAAGTGGACTCCAAAACTTGGCCAA
LOC_Os12g01540
OsAffx.31540.2.S1_s_at--735--2512Chr12:325178..325202 (25 bp)
AACTTGGCCAAGTCATTATCCGCAC
LOC_Os12g01540
Target Sequence 
ATGTCGAGAGTTGCCTTGCTATGAGATATGAAGCTCTGCTCCTGAGACAAGCCAAATACTCCGACGACCTTCATCTGCAA
GTATCCAATGAAGAATGGCTAACTTTTGCAAAGGACTCTCTTGATAATGGTTTTTACACCATTGCTTCCAAGGCTTTTGC
AAATGCTCTCTTGCATATTGATCCCAGCCACCCAGGATACTTGGACTCAACCAATTCTATTCTGAAGAAAGATAAGATAA
ATGATATAAGTGGACTCCAAAACTTGGCCAAGTCATTATCCGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31540.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis