Browse Element(s) Details


OsAffx.31558.1.S1_x_at

Description tigr:9640.m00202
TID=OsAffx.31558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0294011/11hypothetical protein
LOC_Os11g031902/11hypothetical protein
LOC_Os12g029301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02900OsAffx.18648.1.S1_at1/1112+1062020..1067900retrotransposon protein, putative, unclassified
LOC_Os12g02910Os.24025.1.S1_s_at11/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02910Os.57150.1.S1_at8/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02920OsAffx.31556.1.S1_at11/1112+1080583..1081152hypothetical protein
LOC_Os12g02930OsAffx.31557.1.S1_at6/1112+1088401..1088841hypothetical protein
LOC_Os12g02930OsAffx.31558.1.S1_x_at1/1112+1088401..1088841hypothetical protein
LOC_Os12g02940OsAffx.31558.1.S1_x_at11/1112+1091580..1091984hypothetical protein
LOC_Os12g02940OsAffx.31557.1.S1_at1/1112+1091580..1091984hypothetical protein
LOC_Os12g02950Os.52945.1.S1_at11/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02950Os.52764.1.S1_x_at3/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02960OsAffx.19460.1.S1_at11/1112+1096484..1097350Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os12g02970OsAffx.19461.1.S1_at11/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_x_at7/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_at2/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02980Os.11718.1.S1_at11/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.11908.1.S1_s_at4/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.47730.1.S1_x_at1/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.47730.2.S1_x_at1/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02990OsAffx.7467.1.S1_at11/1112+1111362..1111955hypothetical protein
LOC_Os12g03000Os.31312.2.S1_x_at4/1112+1115674..1118933retrotransposon protein, putative, unclassified
LOC_Os12g03000Os.31312.5.S1_x_at4/1112+1115674..1118933retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31558.1.S1_x_at--633--8811Chr12:1091899..1091923 (25 bp)
TGTTGCTGGCGTATCTGTCGCGCGA
LOC_Os12g02940
OsAffx.31558.1.S1_x_at--341--4711Chr12:1091895..1091919 (25 bp)
GCTGGCGTATCTGTCGCGCGAGGAG
LOC_Os12g02940
OsAffx.31558.1.S1_x_at--492--9153Chr12:1091782..1091806 (25 bp)
TGCCGACCCTCAGCGAGGAGGCGAT
LOC_Os12g02940
OsAffx.31558.1.S1_x_at--296--9091Chr12:1091707..1091731 (25 bp)
TGCTCCGAGCCGACCGGACGCTGAG
LOC_Os12g02940
OsAffx.31558.1.S1_x_at--866--5791Chr12:1091691..1091715 (25 bp)
GACGCTGAGGGAGGCCGTCATGAGC
LOC_Os12g02940
OsAffx.31558.1.S1_x_at--955--3851Chr12:1091687..1091711 (25 bp)
CTGAGGGAGGCCGTCATGAGCATGC
LOC_Os12g02940
OsAffx.31558.1.S1_x_at--817--6131Chr12:1091685..1091709 (25 bp)
GAGGGAGGCCGTCATGAGCATGCGC
LOC_Os12g02940
OsAffx.31558.1.S1_x_at--557--891Chr12:1091680..1091704 (25 bp)
AGGCCGTCATGAGCATGCGCAAGGA
LOC_Os12g02940
OsAffx.31558.1.S1_x_at--752--4491Chr12:1091678..1091702 (25 bp)
GCCGTCATGAGCATGCGCAAGGACC
LOC_Os12g02940
OsAffx.31558.1.S1_x_at--750--691Chr12:1091672..1091696 (25 bp)
ATGAGCATGCGCAAGGACCAGGACC
LOC_Os12g02940
OsAffx.31558.1.S1_x_at--144--9932Chr12:1091618..1091642 (25 bp)
TACGTCGACGTCCTGGACGAGGTCT
LOC_Os12g02940
Target Sequence 
TGTTGCTGGCGTATCTGTCGCGCGAGGAGGAGGATGGGAAGAAGAGGAAGAAGGTGGTGAGGAGGCTGGGGAAGGAGGAG
GTGGAGAGGCTGCTGTCGGTGACGGTGACGGTGACCGTGCCGACCCTCAGCGAGGAGGCGATGGAGGAGGACGATGAGGA
CGACGAGGAGGATGTGCGGGAGAGGGAGATGCTGCTCCGAGCCGACCGGACGCTGAGGGAGGCCGTCATGAGCATGCGCA
AGGACCAGGACCTCATCCGCTCCCTGTTCGAGGCCAAGGGCTACGTCGACGTCCTGGACGAGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31558.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis