Browse Element(s) Details


OsAffx.31580.1.S1_x_at

Description tigr:9640.m00376
TID=OsAffx.31580.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ring finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0459011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g046601/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04500Os.37430.1.S1_at5/1112+1914875..1916596Two-component response regulator ARR8, putative, expressed
LOC_Os12g04510Os.9249.1.S1_at10/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04510Os.37965.1.S1_at1/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04520Os.18691.1.S1_at5/1112+1921577..1925626mitochondrial L-galactono-1,4-lactone dehydrogenase, putative
LOC_Os12g04530OsAffx.19491.1.S1_at11/1112+1925876..1927095hypothetical protein
LOC_Os12g04540OsAffx.30819.1.S1_at11/1112+1928974..1930164hypothetical protein
LOC_Os12g04550OsAffx.22355.1.S1_at1/1112+1931308..1932151retrotransposon protein, putative, unclassified
LOC_Os12g04560OsAffx.19494.1.S1_at5/1112+1932481..1932809Calmodulin, putative
LOC_Os12g04570OsAffx.31579.1.S1_at10/1112+1933614..1935143hypothetical protein
LOC_Os12g04570Os.52519.1.S1_at5/1112+1933614..1935143hypothetical protein
LOC_Os12g04580OsAffx.19494.1.S1_at5/1112+1936309..1936617Calmodulin-related protein 97A, putative
LOC_Os12g04590Os.40368.1.A1_s_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590OsAffx.31580.1.S1_x_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590Os.55645.1.S1_at4/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04610Os.54131.1.S1_at10/1112+1948575..1951619expressed protein
LOC_Os12g04620OsAffx.19542.3.S1_x_at5/1112+1955881..1959402retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04630NANA12+1960915..1961335hypothetical protein
LOC_Os12g04640OsAffx.7485.1.S1_x_at11/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.35004.1.S1_x_at2/1112+1965078..1966645major facilitator superfamily protein
LOC_Os12g04640Os.47306.1.S1_x_at1/1112+1965078..1966645major facilitator superfamily protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31580.1.S1_x_at--1084--331Chr12:1939009..1939033 (25 bp)
ATACAACTCTTGTGCGTACTCATGC
LOC_Os12g04590
OsAffx.31580.1.S1_x_at--186--2413Chr02:15430388..15430407 (20 bp)
AAACACCATTCCATTCATGTACCAT
NONE
OsAffx.31580.1.S1_x_at--240--711Chr12:1938934..1938958 (25 bp)
ATGATCGGATTGCTATTGTTTCGGG
LOC_Os12g04590
OsAffx.31580.1.S1_x_at--699--10831Chr12:1938892..1938916 (25 bp)
TTGGGATTCCCCTCGAAAGATGAAC
LOC_Os12g04590
OsAffx.31580.1.S1_x_at--1046--1291Chr12:1938875..1938899 (25 bp)
AGATGAACATACTTTCCCGCTAAAA
LOC_Os12g04590
OsAffx.31580.1.S1_x_at--670--9811Chr12:1938855..1938879 (25 bp)
TAAAAGCTTCCTCTAGTTCTTCCCA
LOC_Os12g04590
OsAffx.31580.1.S1_x_at--855--3791Chr12:1938829..1938853 (25 bp)
CTCGCTTGCTTCTCTTGCAGTAGAA
LOC_Os12g04590
OsAffx.31580.1.S1_x_at--1108--5391Chr12:1938807..1938831 (25 bp)
GAAGCTTCATCCTCTACCAAAGAAA
LOC_Os12g04590
OsAffx.31580.1.S1_x_at--25--10751Chr12:1938777..1938801 (25 bp)
TTGCACTCCTCATTGGCGTTCATGT
LOC_Os12g04590
OsAffx.31580.1.S1_x_at--744--951Chr12:1938741..1938765 (25 bp)
AGGACAGCCATTACCACAGCGACAT
LOC_Os12g04590
OsAffx.31580.1.S1_x_at--451--5671Chr12:1938285..1938745 (25 bp)
GACATCACGACATCGCCATAATGTT
LOC_Os12g04590
Target Sequence 
ATACAACTCTTGTGCGTACTCATGCTCCATCAAACACCATTCCATTCATGTACCATCTGTTATTATTCATGTTTTATGAT
CGGATTGCTATTGTTTCGGGGTATTACAGTGCCAACATTGGGATTCCCCTCGAAAGATGAACATACTTTCCCGCTAAAAG
CTTCCTCTAGTTCTTCCCAGCTCGCTTGCTTCTCTTGCAGTAGAAGCTTCATCCTCTACCAAAGAAAGCTCCTTGCACTC
CTCATTGGCGTTCATGTCCTGGAGCCCGAGGACAGCCATTACCACAGCGACATCACGACATCGCCATAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31580.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis