Browse Element(s) Details


OsAffx.31603.1.S1_at

Description tigr:9640.m00514
TID=OsAffx.31603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0594011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05900Os.8594.1.S1_at11/1112+2707478..2712514rac GTPase activating protein 1, putative, expressed
LOC_Os12g05909NANA12+2715585..2715720NA
LOC_Os12g05920Os.51064.1.S1_at9/1112+2723050..2725350expressed protein
LOC_Os12g05930OsAffx.7495.1.S1_at11/1112+2731573..2732169Leucine Rich Repeat family protein
LOC_Os12g05940OsAffx.8606.1.S1_s_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31603.1.S1_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31255.1.S1_at1/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05950OsAffx.19511.1.S1_at11/1112+2740006..2740426hypothetical protein
LOC_Os12g05960OsAffx.31604.1.S1_at11/1112+2743306..2744085hypothetical protein
LOC_Os12g05970OsAffx.7496.1.S1_at11/1112+2746577..2749107hypothetical protein
LOC_Os12g05980NANA12+2750933..2751430hypothetical protein
LOC_Os12g05990Os.19369.1.S1_at11/1112+2761324..2762601No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31603.1.S1_at--426--5111Chr12:2737913..2737937 (25 bp)
GCACTCAATTGAGCGAGGGACTGAA
LOC_Os12g05940
OsAffx.31603.1.S1_at--120--2511Chr12:2737972..2737996 (25 bp)
AACATTGTACGCTTTTTCCACCACT
LOC_Os12g05940
OsAffx.31603.1.S1_at--651--10391Chr12:2737985..2738009 (25 bp)
TTTTCCACCACTTTGACAGAGTTGT
LOC_Os12g05940
OsAffx.31603.1.S1_at--1153--3151Chr12:2738060..2738084 (25 bp)
AATTGCCACGCATCTTAATGAGAAT
LOC_Os12g05940
OsAffx.31603.1.S1_at--924--691Chr12:2738077..2738101 (25 bp)
ATGAGAATTCCTATGCTATTGCAAA
LOC_Os12g05940
OsAffx.31603.1.S1_at--1150--1331Chr12:2738541..2738565 (25 bp)
AGAGTGCTTTGCGTTTGTTGATAAT
LOC_Os12g05940
OsAffx.31603.1.S1_at--12--9771Chr12:2738562..2738586 (25 bp)
TAATGCTCTTGAAACCCTTGGACAG
LOC_Os12g05940
OsAffx.31603.1.S1_at--149--6491Chr12:2738649..2738673 (25 bp)
GATACCTGAAAATGTCTCCCAAGCT
LOC_Os12g05940
OsAffx.31603.1.S1_at--1118--751Chr12:2738660..2738684 (25 bp)
ATGTCTCCCAAGCTATTGGCCTAAA
LOC_Os12g05940
OsAffx.31603.1.S1_at--745--2771Chr12:2738690..2738714 (25 bp)
AAGAGACCCGGTGTAGCACATCGAA
LOC_Os12g05940
OsAffx.31603.1.S1_at--794--2831Chr12:2738883..2738907 (25 bp)
AAGTAGCACATCCTGAGCCATTAGA
LOC_Os12g05940
Target Sequence 
GCACTCAATTGAGCGAGGGACTGAACAGTGATTTGAAGGAGTATTTAAATTGTGAATTAAACATTGTACGCTTTTTCCAC
CACTTTGACAGAGTTGTACAAGGGAAGCGAGATAAAGAGATCAAATCAGAGTATGAATCCAGGAAAAAATTGCCACGCAT
CTTAATGAGAATTCCTATGCTATTGCAAACAAATTTTGAAGAGTGCTTTGCGTTTGTTGATAATGCTCTTGAAACCCTTG
GACAGCAAGTGGAACAAATGGTAGAAGTGAATACAAATATTCAGTCGAATTTAGAGACAGAGTTTGAGATACCTGAAAAT
GTCTCCCAAGCTATTGGCCTAAAGAAAAAAGAGACCCGGTGTAGCACATCGAAGCGAAAGAAGAATTGGGTTGACAAGCT
ACATAAAAAAAGAAAGAAAAGCCTAAGGTATGCTAAGAATGGGAATGAAGTAGCACATCCTGAGCCATTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis