Browse Element(s) Details


OsAffx.31612.1.S1_at

Description tigr:9640.m00544
TID=OsAffx.31612.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0624010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06200Os.424.1.S1_at11/1112+2938696..2944050Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein
LOC_Os12g06240OsAffx.31612.1.S1_at10/1112+2966582..2967203hypothetical protein
LOC_Os12g06250Os.54124.1.S1_at11/1112+2969930..2973161expressed protein
LOC_Os12g06250Os.54124.1.S2_at11/1112+2969930..2973161expressed protein
LOC_Os12g06260Os.9526.1.S1_at11/1112+2978506..2979852Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06270Os.48434.1.A1_at2/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06270OsAffx.9699.1.S1_at1/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31612.1.S1_at--524--10332Chr01:14466188..14466211 (24 bp)
TTTCACTGGTGTTTGGGTCGACAAG
NONE
OsAffx.31612.1.S1_at--398--6851Chr12:2967134..2967158 (25 bp)
GTTTGGGTCGACAAGTGCGATAGAT
LOC_Os12g06240
OsAffx.31612.1.S1_at--1105--2851Chr12:2967122..2967146 (25 bp)
AAGTGCGATAGATTTGTCTTGTGGT
LOC_Os12g06240
OsAffx.31612.1.S1_at--744--211Chr12:2967111..2967135 (25 bp)
ATTTGTCTTGTGGTGGGAGGCCTTC
LOC_Os12g06240
OsAffx.31612.1.S1_at--845--3611Chr12:2967105..2967129 (25 bp)
CTTGTGGTGGGAGGCCTTCTCCTTC
LOC_Os12g06240
OsAffx.31612.1.S1_at--209--10591Chr12:2967089..2967113 (25 bp)
TTCTCCTTCCATAACAACGAGGTGG
LOC_Os12g06240
OsAffx.31612.1.S1_at--740--2591Chr12:2967074..2967098 (25 bp)
AACGAGGTGGTGTCGGCCGCTCAAA
LOC_Os12g06240
OsAffx.31612.1.S1_at--693--9691Chr12:2967054..2967078 (25 bp)
TCAAATCCTCTCTAGCGACGTTGCT
LOC_Os12g06240
OsAffx.31612.1.S1_at--1099--7751Chr12:2967018..2967042 (25 bp)
GGTGACCTTCATTGTATCCAATCCA
LOC_Os12g06240
OsAffx.31612.1.S1_at--1094--6891Chr12:2967005..2967029 (25 bp)
GTATCCAATCCAACGGAGCATCTTG
LOC_Os12g06240
OsAffx.31612.1.S1_at--657--5931NONE
GAGCATCTTGAAGATTGCTGCTGCA
NONE
Target Sequence 
TTTCACTGGTGTTTGGGTCGACAAGTGCGATAGATTTGTCTTGTGGTGGGAGGCCTTCTCCTTCCATAACAACGAGGTGG
TGTCGGCCGCTCAAATCCTCTCTAGCGACGTTGCTGCTATTGATTTGGTGACCTTCATTGTATCCAATCCAACGGAGCAT
CTTGAAGATTGCTGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis