Browse Element(s) Details


OsAffx.31621.1.S1_at

Description tigr:9640.m00601
TID=OsAffx.31621.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0677010/11hypothetical protein
LOC_Os12g067501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06710NANA12+3263844..3267417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06720OsAffx.19675.1.S1_x_at1/1112+3267682..3270139retrotransposon protein, putative, unclassified
LOC_Os12g06720OsAffx.19675.1.S1_at1/1112+3267682..3270139retrotransposon protein, putative, unclassified
LOC_Os12g06730OsAffx.7504.1.S1_at11/1112+3274132..3274808hypothetical protein
LOC_Os12g06740Os.12960.1.S1_at11/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06740OsAffx.31618.1.S1_at1/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06750OsAffx.31620.1.S1_at10/1112+3283378..3286501hypothetical protein
LOC_Os12g06750OsAffx.31621.1.S1_at1/1112+3283378..3286501hypothetical protein
LOC_Os12g06760OsAffx.31620.1.S1_at2/1112+3286850..3287385hypothetical protein
LOC_Os12g06770OsAffx.31621.1.S1_at10/1112+3288021..3289480hypothetical protein
LOC_Os12g06780OsAffx.7506.1.S1_at11/1112+3292529..3293680expressed protein
LOC_Os12g06790OsAffx.7507.1.S1_at11/1112+3294339..3295272hypothetical protein
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31621.1.S1_at--452--7311NONE
GTGCTGAGGAGCAAAGAACCATATA
NONE
OsAffx.31621.1.S1_at--606--5431Chr12:3288801..3288825 (25 bp)
GAACCATATATTCCAGTGAGCAAGA
LOC_Os12g06770
OsAffx.31621.1.S1_at--678--2431Chr12:3288874..3288895 (22 bp)
AAAAGCTTCTTATCATGGCACCCTT
LOC_Os12g06770
OsAffx.31621.1.S1_at--668--411Chr12:3288882..3288906 (25 bp)
ATCATGGCACCCTTCAAGATCAACA
LOC_Os12g06770
OsAffx.31621.1.S1_at--640--6451Chr12:3288899..3288923 (25 bp)
GATCAACAAGACTATCGCTGCTACT
LOC_Os12g06770
OsAffx.31621.1.S1_at--1026--2752Chr12:3288906..3288930 (25 bp)
AAGACTATCGCTGCTACTTTCTTCA
LOC_Os12g06770
OsAffx.31621.1.S1_at--104--831Chr12:3288930..3288954 (25 bp)
ATGGTTCTTATTATGTCCTGCGCCC
LOC_Os12g06770
OsAffx.31621.1.S1_at--268--3671Chr12:3288936..3288960 (25 bp)
CTTATTATGTCCTGCGCCCTCACAT
LOC_Os12g06770
OsAffx.31621.1.S1_at--763--3531Chr12:3288964..3289383 (25 bp)
CATCTGCTTGCCAGGGTGGTACGGA
LOC_Os12g06770
OsAffx.31621.1.S1_at--378--5431Chr12:3289397..3289421 (25 bp)
GAACCACACTGCACAATGGATTCGT
LOC_Os12g06770
OsAffx.31621.1.S1_at--1077--3291Chr12:3289408..3289432 (25 bp)
CACAATGGATTCGTGCAGAGAAAAA
LOC_Os12g06770
Target Sequence 
GTGCTGAGGAGCAAAGAACCATATATTCCAGTGAGCAAGAGGAAGGAGAAAAGCTTCTTATCATGGCACCCTTCAAGATC
AACAAGACTATCGCTGCTACTTTCTTCATGGTTCTTATTATGTCCTGCGCCCTCACATCCACATCTGCTTGCCAGGGTGG
TACGGAGTGCACCGTTGAAGAACCACACTGCACAATGGATTCGTGCAGAGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis