Browse Element(s) Details


OsAffx.31634.1.S1_at

Description tigr:9640.m00680
TID=OsAffx.31634.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0751011/11hypothetical protein
LOC_Os12g197301/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07480OsAffx.31633.1.S1_s_at11/1112+3708751..3710537TCP family transcription factor containing protein, expressed
LOC_Os12g07490OsAffx.7515.1.S1_s_at11/1112+3717759..3719242Sec61beta family protein, expressed
LOC_Os12g07500Os.50888.1.S1_at11/1112+3722654..3725841expressed protein
LOC_Os12g07510OsAffx.31634.1.S1_at11/1112+3726841..3730984hypothetical protein
LOC_Os12g07510Os.51788.2.S1_at1/1112+3726841..3730984hypothetical protein
LOC_Os12g07520OsAffx.7516.1.S1_at11/1112+3738507..3741724Ribosome inactivating protein
LOC_Os12g07530Os.17850.1.S1_at11/1112+3742733..3748394expressed protein
LOC_Os12g07540Os.21075.1.S1_at10/1112+3752602..3757543Growth regulator protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31634.1.S1_at--486--6011Chr12:3730898..3730922 (25 bp)
GAGAGAGGACGTTGTCGCCGTCGCT
LOC_Os12g07510
OsAffx.31634.1.S1_at--3--2611Chr12:3730864..3730888 (25 bp)
AACGCCGAGCTCGTAGCTGGGTCAG
LOC_Os12g07510
OsAffx.31634.1.S1_at--340--7611Chr12:3727841..3727865 (25 bp)
GGGAACGTCAACCACGCGTCATGGT
LOC_Os12g07510
OsAffx.31634.1.S1_at--756--6991Chr12:3727814..3727838 (25 bp)
GTACGATATCGTTTGTGGCATAGTG
LOC_Os12g07510
OsAffx.31634.1.S1_at--870--7511Chr12:3727800..3727824 (25 bp)
GTGGCATAGTGATTGCACGATGTCA
LOC_Os12g07510
OsAffx.31634.1.S1_at--13--5111Chr12:3727786..3727810 (25 bp)
GCACGATGTCATGAACTTGTTCTGG
LOC_Os12g07510
OsAffx.31634.1.S1_at--825--6616Chr12:11491023..11491043 (21 bp)
GTTGGTAGCCATGTCGCAAACATCA
LOC_Os12g19730
OsAffx.31634.1.S1_at--75--7231Chr12:3727750..3727774 (25 bp)
GTCGCAAACATCATATTCAATCAAA
LOC_Os12g07510
OsAffx.31634.1.S1_at--744--6171Chr12:3726995..3727019 (25 bp)
GAGGAGGCCGGCTCTCATTGCTTGT
LOC_Os12g07510
OsAffx.31634.1.S1_at--537--9591Chr12:3726981..3727005 (25 bp)
TCATTGCTTGTCACCAGCAGACGGG
LOC_Os12g07510
OsAffx.31634.1.S1_at--953--8731Chr12:3726973..3726997 (25 bp)
TGTCACCAGCAGACGGGCTAATGCG
LOC_Os12g07510
Target Sequence 
GAGAGAGGACGTTGTCGCCGTCGCTGCTCCGCTCAACGCCGAGCTCGTAGCTGGGTCAGGGAAGATGGGAGAGGTAGAAC
GGCGTTCGGAAGTGGAGAGGCGCCAACGGGGAGAGGGGAGAGGCCGCCGGCAGCGGGAGTTCATCGTAGAGGTGGGGGAG
TGGGGGGACACCGGAGGCGAGTTCGTCGCCGGTGAACTTGCCGAGGTGGGGGGAACGTCAACCACGCGTCATGGTTGGTA
CGATATCGTTTGTGGCATAGTGATTGCACGATGTCATGAACTTGTTCTGGTTGGTAGCCATGTCGCAAACATCATATTCA
ATCAAAGGAGGGAGGCTTGCTGCGGGTGGCAAGCGAGCGCGGTAGGCGGGTGGATGCGGGTGTGGAGACGCGCGGGGAAG
AAGTGGGAGATAGGGAGAGGAGGCCGGCTCTCATTGCTTGTCACCAGCAGACGGGCTAATGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis