Browse Element(s) Details


OsAffx.31660.2.S1_x_at

Description tigr:9640.m00874
TID=OsAffx.31660.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0936010/11expressed protein
LOC_Os12g122506/11hypothetical protein
LOC_Os12g166003/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09300Os.47745.1.S1_at11/1112+4880023..4883861amino acid permease I, putative, expressed
LOC_Os12g09310OsAffx.7535.1.S1_at11/1112+4889982..4890461hypothetical protein
LOC_Os12g09320OsAffx.7536.1.S1_at11/1112+4892122..4893528amino acid carrier, putative
LOC_Os12g09330OsAffx.10071.1.S1_at5/1112+4894827..4896151transposon protein, putative, Mariner sub-class
LOC_Os12g09340OsAffx.31659.2.S1_at11/1112+4896621..4897088hypothetical protein
LOC_Os12g09340OsAffx.31659.1.S1_s_at11/1112+4896621..4897088hypothetical protein
LOC_Os12g09350Os.52242.1.S1_at1/1112+4903456..4906785transposon protein, putative, Mariner sub-class
LOC_Os12g09360OsAffx.31660.2.S1_x_at10/1112+4907373..4909076expressed protein
LOC_Os12g09360OsAffx.31660.1.S1_at5/1112+4907373..4909076expressed protein
LOC_Os12g09360OsAffx.31660.3.S1_x_at4/1112+4907373..4909076expressed protein
LOC_Os12g09370OsAffx.19573.1.S1_at11/1112+4909942..4910623hypothetical protein
LOC_Os12g09380OsAffx.19574.1.S1_at11/1112+4919918..4920307hypothetical protein
LOC_Os12g09380OsAffx.19574.1.S1_x_at11/1112+4919918..4920307hypothetical protein
LOC_Os12g09390OsAffx.31661.1.S1_at11/1112+4921841..4923598hypothetical protein
LOC_Os12g09390OsAffx.31661.2.S1_at1/1112+4921841..4923598hypothetical protein
LOC_Os12g09400OsAffx.4856.1.S1_x_at1/1112+4924925..4929037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g09410OsAffx.4856.1.S1_x_at1/1112+4930687..4932183retrotransposon protein, putative, LINE subclass
LOC_Os12g09420Os.14491.2.S1_x_at1/1112+4932786..4936184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g09420Os.47463.1.S1_x_at1/1112+4932786..4936184transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31660.2.S1_x_at--1060--8351Chr12:4908711..4908735 (25 bp)
GGCGTCGGAGGTTTGCAAGGCAGCT
LOC_Os12g09360
OsAffx.31660.2.S1_x_at--549--3752Chr12:6725615..6725639 (25 bp)
CTCTTATTCTAATTCCGGCATCAAC
LOC_Os12g12250
OsAffx.31660.2.S1_x_at--239--4972Chr12:4908593..4908617 (25 bp)
GCATCAACAACTAGGGTCTTTGGCG
LOC_Os12g09360
OsAffx.31660.2.S1_x_at--338--3552Chr12:4908592..4908616 (25 bp)
CATCAACAACTAGGGTCTTTGGCGG
LOC_Os12g09360
OsAffx.31660.2.S1_x_at--1127--3252Chr12:4908586..4908610 (25 bp)
CAACTAGGGTCTTTGGCGGCGGTAT
LOC_Os12g09360
OsAffx.31660.2.S1_x_at--878--3932Chr12:6725575..6725599 (25 bp)
CGGCGGTATGCGTCGATTGACTCAA
LOC_Os12g12250
OsAffx.31660.2.S1_x_at--593--10671NONE
TTGACTCAAAGGACAATGTTGGTTG
NONE
OsAffx.31660.2.S1_x_at--495--5612Chr12:6724642..6724666 (25 bp)
GACAATGTTGGTTGACGATAGCGAC
LOC_Os12g12250
OsAffx.31660.2.S1_x_at--198--312Chr12:6724625..6724649 (25 bp)
ATAGCGACCACACGGCACTGTTTGA
LOC_Os12g12250
OsAffx.31660.2.S1_x_at--718--2932Chr12:6724596..6724620 (25 bp)
AAGGCAAGCGTCAAGCAAATCGGCA
LOC_Os12g12250
OsAffx.31660.2.S1_x_at--78--8452Chr12:6724444..6724468 (25 bp)
TGGCCTAGAAGACCTCCTGCAAGAC
LOC_Os12g12250
Target Sequence 
GGCGTCGGAGGTTTGCAAGGCAGCTGATGTAATGCTCAAGGAGGTGGCGGCGCCCGCGGATCTGATAAAGGAGGGGGCAG
TGGAGGACGAGGCTGACCAGCCTCTTATTCTAATTCCGGCATCAACAACTAGGGTCTTTGGCGGCGGTATGCGTCGATTG
ACTCAAAGGACAATGTTGGTTGACGATAGCGACCACACGGCACTGTTTGAGAAGAAGGCAAGCGTCAAGCAAATCGGCAT
CGAGGAGATGAGGGGAAAAGCTAAGGATGTGAGCAGCGAGGAGGGGAACAGCGAGGAGGTGAAGTCAAGCGACGATGATG
AAGACATGGTCATTGGGGGATATACGCAAGATCCATATGATGATAGTGGCCTAGAAGACCTCCTGCAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31660.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis