Browse Element(s) Details


OsAffx.31693.1.S1_at

Description tigr:9640.m01037
TID=OsAffx.31693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1096011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10900OsAffx.23696.1.S1_x_at2/1112+5891603..5899436retrotransposon protein, putative, unclassified
LOC_Os12g10900Os.45957.4.S1_x_at1/1112+5891603..5899436retrotransposon protein, putative, unclassified
LOC_Os12g10910OsAffx.19602.2.S1_at11/1112+5900093..5901312A/G-specific adenine DNA glycosylase, putative, expressed
LOC_Os12g10920OsAffx.31691.1.S1_at11/1112+5902615..5903008hypothetical protein
LOC_Os12g10930NANA12+5903561..5906601Leucine Rich Repeat family protein, expressed
LOC_Os12g10940OsAffx.19604.1.S1_at11/1112+5912672..5913127hypothetical protein
LOC_Os12g10950OsAffx.31692.1.S1_at11/1112+5914418..5914639hypothetical protein
LOC_Os12g10960OsAffx.31693.1.S1_at11/1112+5916307..5916696hypothetical protein
LOC_Os12g10970Os.45976.1.S1_x_at3/1112+5918841..5922586transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g10980NANA12+5923819..5924433hypothetical protein
LOC_Os12g10990Os.46306.1.S1_x_at2/1112+5928721..5929224transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000Os.46314.2.S1_x_at5/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000Os.47114.1.S1_x_at1/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000OsAffx.32036.1.S1_at1/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000Os.10731.2.A1_at1/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11010OsAffx.31694.1.S1_at11/1112+5936852..5938648hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31693.1.S1_at--882--4511Chr12:5916605..5916629 (25 bp)
GCCGCCGTTCGGGAGATGAGCCGGA
LOC_Os12g10960
OsAffx.31693.1.S1_at--958--411Chr12:5916546..5916570 (25 bp)
ATCATCGTGGTTTCCGGCGATGCGG
LOC_Os12g10960
OsAffx.31693.1.S1_at--274--6351Chr12:5916528..5916552 (25 bp)
GATGCGGTCATCAGCCACCGTGAGC
LOC_Os12g10960
OsAffx.31693.1.S1_at--1053--3551Chr12:5916520..5916544 (25 bp)
CATCAGCCACCGTGAGCGCGTGGGA
LOC_Os12g10960
OsAffx.31693.1.S1_at--903--7651Chr12:5916482..5916506 (25 bp)
GGGATGGATCTCACCTAGCATGCTC
LOC_Os12g10960
OsAffx.31693.1.S1_at--985--6411Chr12:5916476..5916500 (25 bp)
GATCTCACCTAGCATGCTCCGCTAG
LOC_Os12g10960
OsAffx.31693.1.S1_at--1109--1791Chr12:5916443..5916467 (25 bp)
ACCCCACGCTTGGTGGTTGTGAGAG
LOC_Os12g10960
OsAffx.31693.1.S1_at--717--6391Chr12:5916401..5916425 (25 bp)
GATCGATTCATGGATATCCTGTCTC
LOC_Os12g10960
OsAffx.31693.1.S1_at--924--9371Chr12:5916399..5916423 (25 bp)
TCGATTCATGGATATCCTGTCTCTC
LOC_Os12g10960
OsAffx.31693.1.S1_at--335--7891Chr12:5916357..5916381 (25 bp)
GGTTCTCACTCTCACAGTAGAGCGG
LOC_Os12g10960
OsAffx.31693.1.S1_at--723--9691Chr12:5916352..5916376 (25 bp)
TCACTCTCACAGTAGAGCGGAGGAG
LOC_Os12g10960
Target Sequence 
GCCGCCGTTCGGGAGATGAGCCGGAGCCAACGGTATCATTCCTCCTCCTCGTCGTCATCATCATCGTGGTTTCCGGCGAT
GCGGTCATCAGCCACCGTGAGCGCGTGGGAGGAGCAGTGGGAGGGGATGGATCTCACCTAGCATGCTCCGCTAGCGCCCC
TCACCCCACGCTTGGTGGTTGTGAGAGGAAGGGGGAGAAAGAGAGATCGATTCATGGATATCCTGTCTCTCCATCCCTCC
ACAATCTTGGTTCTCACTCTCACAGTAGAGCGGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis