Browse Element(s) Details


OsAffx.19602.2.S1_at

Description tigr:9640.m01032
TID=OsAffx.19602.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL049640 adenine DNA glycosylase like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1091011/11A/G-specific adenine DNA glycosylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10890OsAffx.442.1.S1_x_at6/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.2.S1_s_at6/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.4.S1_at4/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.4.S1_x_at3/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.1.S1_x_at3/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.442.1.S1_at3/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.1.S1_at2/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.24587.1.S1_x_at2/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.2.S1_x_at1/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10900OsAffx.23696.1.S1_x_at2/1112+5891603..5899436retrotransposon protein, putative, unclassified
LOC_Os12g10900Os.45957.4.S1_x_at1/1112+5891603..5899436retrotransposon protein, putative, unclassified
LOC_Os12g10910OsAffx.19602.2.S1_at11/1112+5900093..5901312A/G-specific adenine DNA glycosylase, putative, expressed
LOC_Os12g10920OsAffx.31691.1.S1_at11/1112+5902615..5903008hypothetical protein
LOC_Os12g10930NANA12+5903561..5906601Leucine Rich Repeat family protein, expressed
LOC_Os12g10940OsAffx.19604.1.S1_at11/1112+5912672..5913127hypothetical protein
LOC_Os12g10950OsAffx.31692.1.S1_at11/1112+5914418..5914639hypothetical protein
LOC_Os12g10960OsAffx.31693.1.S1_at11/1112+5916307..5916696hypothetical protein
LOC_Os12g10970Os.45976.1.S1_x_at3/1112+5918841..5922586transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g10980NANA12+5923819..5924433hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006284biological_processbase-excision repair
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19602.2.S1_at--833--2711Chr12:5900166..5900190 (25 bp)
AAGCACTCACACTTTCCAACCAAAG
LOC_Os12g10910
OsAffx.19602.2.S1_at--1155--9191Chr12:5900180..5900204 (25 bp)
TCCAACCAAAGTGCTTCCGTAAAAG
LOC_Os12g10910
OsAffx.19602.2.S1_at--412--1112Chr12:5900189..5900213 (25 bp)
AGTGCTTCCGTAAAAGTTACAGACT
LOC_Os12g10910
OsAffx.19602.2.S1_at--811--1211Chr12:5900203..5900227 (25 bp)
AGTTACAGACTACCCACGAGTGGTT
LOC_Os12g10910
OsAffx.19602.2.S1_at--1026--3391Chr12:5900208..5900232 (25 bp)
CAGACTACCCACGAGTGGTTCCAAA
LOC_Os12g10910
OsAffx.19602.2.S1_at--1152--7831Chr12:5900224..5900248 (25 bp)
GGTTCCAAAAGCCAAGCCACGGTCT
LOC_Os12g10910
OsAffx.19602.2.S1_at--744--3831Chr12:5900256..5900280 (25 bp)
CTGCTGTTTGTGTTGTTCAAATCAA
LOC_Os12g10910
OsAffx.19602.2.S1_at--359--8531Chr12:5901065..5901089 (25 bp)
TGGAGGGACAAGATAACAGCAAACT
LOC_Os12g10910
OsAffx.19602.2.S1_at--329--2151Chr12:5901080..5901104 (25 bp)
ACAGCAAACTGAGATTCATTGACGA
LOC_Os12g10910
OsAffx.19602.2.S1_at--486--9591Chr12:5901095..5901119 (25 bp)
TCATTGACGAAAATGCAGTCGACTC
LOC_Os12g10910
OsAffx.19602.2.S1_at--926--2991Chr12:5901106..5901130 (25 bp)
AATGCAGTCGACTCAATAGGATTGA
LOC_Os12g10910
Target Sequence 
AAGCACTCACACTTTCCAACCAAAGTGCTTCCGTAAAAGTTACAGACTACCCACGAGTGGTTCCAAAAGCCAAGCCACGG
TCTGATTTTGCTGCTGTTTGTGTTGTTCAAATCAATGATAATCTCTTTCTATTGATCAAGAGGCCAGAAGAGGGCCTGCT
CGCTGGGCTCTGGGAGTTCCCATCTGTTCTTGTGAGCGAAGAGAAGACTGATGTGCTGAATAGGAGAAAAGAGATGGACA
AATATTTGAAGCAGGTCCTTAGCATAGATGTTAAAAGGAGATCCAGTGTGATCCTCAGGGAAGATGTTGGCCAACATGTT
CACATTTTCTCTCACATTCGCCTGACGATGTTTGTTGAGCTGATGATTTTGAACCTCAAAGATGATGGGGATAAATTATG
CATGGAGGGACAAGATAACAGCAAACTGAGATTCATTGACGAAAATGCAGTCGACTCAATAGGATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19602.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis