Browse Element(s) Details


OsAffx.31699.1.S1_at

Description tigr:9640.m01071
TID=OsAffx.31699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1127011/11hypothetical protein
LOC_Os12g201901/11retrotransposon protein, putative, unclassified
LOC_Os07g274201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11220OsAffx.19609.1.S1_at11/1112+6050369..6050962hypothetical protein
LOC_Os12g11230Os.10827.1.S1_x_at11/1112+6054284..6057571transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11230Os.46055.2.S1_x_at5/1112+6054284..6057571transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11240OsAffx.17922.1.S1_x_at5/1112+6058657..6061769hypothetical protein
LOC_Os12g11240Os.9100.1.S3_at2/1112+6058657..6061769hypothetical protein
LOC_Os12g11250Os.19439.2.S1_at11/1112+6062051..6063343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.1.S1_s_at11/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.7.S1_s_at11/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.1.S1_at7/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.2.S1_x_at5/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.5.S1_x_at2/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11270OsAffx.31699.1.S1_at11/1112+6071780..6072255hypothetical protein
LOC_Os12g11280OsAffx.31700.1.S1_at11/1112+6073580..6074221hypothetical protein
LOC_Os12g11290Os.46570.1.S1_at1/1112+6080036..6086708retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11300OsAffx.22699.1.S1_x_at2/1112+6091529..6094213retrotransposon protein, putative, unclassified
LOC_Os12g11300OsAffx.16111.1.S1_at1/1112+6091529..6094213retrotransposon protein, putative, unclassified
LOC_Os12g11310OsAffx.3761.1.S1_x_at1/1112+6095569..6098384hypothetical protein
LOC_Os12g11310OsAffx.30421.1.S1_s_at1/1112+6095569..6098384hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31699.1.S1_at--158--4491Chr12:6071811..6071835 (25 bp)
GCCGGCAAACTCGAGATGGGATTTG
LOC_Os12g11270
OsAffx.31699.1.S1_at--280--8231Chr12:6071814..6071838 (25 bp)
GGCAAACTCGAGATGGGATTTGGAA
LOC_Os12g11270
OsAffx.31699.1.S1_at--96--6251Chr12:6071825..6071849 (25 bp)
GATGGGATTTGGAAGACGCCGGCGA
LOC_Os12g11270
OsAffx.31699.1.S1_at--717--4111Chr12:6071847..6071871 (25 bp)
CGAAGACGGTGAAATCCGGCGATGT
LOC_Os12g11270
OsAffx.31699.1.S1_at--134--8971Chr12:6071856..6071880 (25 bp)
TGAAATCCGGCGATGTGGAGCTGTT
LOC_Os12g11270
OsAffx.31699.1.S1_at--964--3031Chr12:6071859..6071883 (25 bp)
AATCCGGCGATGTGGAGCTGTTAAC
LOC_Os12g11270
OsAffx.31699.1.S1_at--317--9271Chr12:6071861..6071885 (25 bp)
TCCGGCGATGTGGAGCTGTTAACGA
LOC_Os12g11270
OsAffx.31699.1.S1_at--145--3911Chr12:6071863..6071887 (25 bp)
CGGCGATGTGGAGCTGTTAACGACC
LOC_Os12g11270
OsAffx.31699.1.S1_at--239--4631Chr12:6071865..6071889 (25 bp)
GCGATGTGGAGCTGTTAACGACCAA
LOC_Os12g11270
OsAffx.31699.1.S1_at--1100--2794Chr12:6071945..6072166 (25 bp)
AAGATCGTTGCAGAAACAGAAGATA
LOC_Os12g11270
OsAffx.31699.1.S1_at--504--24926Chr12:11824221..11824485 (25 bp)
AACAGAAGATAAGTGTGGGCAAAAG
NONE
Target Sequence 
GCCGGCAAACTCGAGATGGGATTTGGAAGACGCCGGCGAAGACGGTGAAATCCGGCGATGTGGAGCTGTTAACGACCAAA
TTTGGTAATCTGAGTATCGGAGATGAAGATCAGATCGAAGCGGAATCAAAGATGAAGATCGTTGCAGAAACAGAAGATAA
GTGTGGGCAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis