Browse Element(s) Details


OsAffx.31779.1.S1_at

Description tigr:9640.m01713
TID=OsAffx.31779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1750011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17440OsAffx.19717.1.S1_at11/1112+9996211..9996546hypothetical protein
LOC_Os12g17450OsAffx.435.1.S1_at1/1112+9997186..10001032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17460NANA12+10001210..10002253retrotransposon protein, putative, unclassified
LOC_Os12g17470OsAffx.31777.2.S1_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.31777.2.S1_x_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.1.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.5.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17480NANA12+10007910..10011703NB-ARC domain containing protein
LOC_Os12g17490Os.52152.1.S1_at5/1112+10014595..10018771NB-ARC domain containing protein
LOC_Os12g17500OsAffx.31779.1.S1_at11/1112+10019361..10020049hypothetical protein
LOC_Os12g17510OsAffx.22848.4.S1_at2/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17510OsAffx.22848.3.S1_x_at1/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17510OsAffx.22848.4.S1_x_at1/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17520OsAffx.31780.2.S1_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_x_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_s_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.21663.1.S1_at3/1112+10037579..10041323hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31779.1.S1_at--999--6011Chr12:10019995..10020019 (25 bp)
GAGAGTGTAAAGGTCGTGCCACCAC
LOC_Os12g17500
OsAffx.31779.1.S1_at--90--9851Chr12:10019988..10020012 (25 bp)
TAAAGGTCGTGCCACCACTCGTTAT
LOC_Os12g17500
OsAffx.31779.1.S1_at--162--3371Chr12:10019976..10020000 (25 bp)
CACCACTCGTTATTGTTGCTCTAAA
LOC_Os12g17500
OsAffx.31779.1.S1_at--819--8791Chr12:10019963..10019987 (25 bp)
TGTTGCTCTAAACTACGGGCACCGG
LOC_Os12g17500
OsAffx.31779.1.S1_at--869--3971Chr12:10019873..10019897 (25 bp)
CGGGTTGGATTTGGCCACGCCACTA
LOC_Os12g17500
OsAffx.31779.1.S1_at--609--8571Chr12:10019868..10019892 (25 bp)
TGGATTTGGCCACGCCACTACTCTG
LOC_Os12g17500
OsAffx.31779.1.S1_at--737--8591Chr12:10019841..10019865 (25 bp)
TGGTGCCGTCGCTGCTTGGGTCATC
LOC_Os12g17500
OsAffx.31779.1.S1_at--460--8111Chr12:10019796..10019820 (25 bp)
GGACTGAGGAGAGCACAAGCAACAA
LOC_Os12g17500
OsAffx.31779.1.S1_at--1014--1691Chr12:10019697..10019721 (25 bp)
ACCAAGAAGTCACACCCACGTGGAG
LOC_Os12g17500
OsAffx.31779.1.S1_at--609--5331Chr12:10019692..10019716 (25 bp)
GAAGTCACACCCACGTGGAGAATAT
LOC_Os12g17500
OsAffx.31779.1.S1_at--654--1911Chr12:10019405..10019704 (25 bp)
ACGTGGAGAATATCAGGTGGTGTTT
LOC_Os12g17500
Target Sequence 
GAGAGTGTAAAGGTCGTGCCACCACTCGTTATTGTTGCTCTAAACTACGGGCACCGGCGAGGAGAGGGGAGAAGGGATTT
GGCGCCGGCGAGGAGAGTAGAGAAGGGAGATCCGGCGAGCCCCGGGTTGGATTTGGCCACGCCACTACTCTGCCTGGTGC
CGTCGCTGCTTGGGTCATCGCTCCCCGTCGCGGCGCGGTGGACTGAGGAGAGCACAAGCAACAAGCAAGGCAACAAGCAA
CCAAGAAGTCACACATGGAGAAAATATGAGGAAAAGTCACAAAAGCTTGCTGCAAGCAACCAAGAAGTCACACCCACGTG
GAGAATATCAGGTGGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis