Browse Element(s) Details


OsAffx.3178.1.S1_at

Description tigr:9631.m00886
TID=OsAffx.3178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0985011/11auxin-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09810NANA3+4855628..4859260Polyamine oxidase precursor, putative
LOC_Os03g09820OsAffx.25028.1.S1_at11/113+4865505..4866431Transcription factor TFIIB repeat family protein
LOC_Os03g09830OsAffx.3177.1.S1_at11/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_x_at1/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_at1/113+4868609..4871374expressed protein
LOC_Os03g09840Os.15761.1.S1_at11/113+4873640..4876148C2 domain-containing protein, putative, expressed
LOC_Os03g09850OsAffx.3178.1.S1_at11/113+4881472..4882725auxin-responsive protein, putative, expressed
LOC_Os03g09860Os.18202.1.S1_at11/113+4885363..4887908acetyltransferase, GNAT family protein, expressed
LOC_Os03g09870OsAffx.3179.1.S1_s_at11/113+4888771..4891471mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g09880Os.49607.1.S1_at11/113+4892431..4893180membrane protein, putative, expressed
LOC_Os03g09900Os.20151.1.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900Os.20151.2.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900OsAffx.30514.2.S1_s_at1/113+4903067..4905199membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3178.1.S1_at--56--1951Chr03:4882038..4882062 (25 bp)
ACGGCGTCCGCCACGCTGCAGTGGA
LOC_Os03g09850
OsAffx.3178.1.S1_at--1146--1831Chr03:4882026..4882050 (25 bp)
ACGCTGCAGTGGACGCACGGGTCAC
LOC_Os03g09850
OsAffx.3178.1.S1_at--425--7511Chr03:4882018..4882042 (25 bp)
GTGGACGCACGGGTCACTGAACGCC
LOC_Os03g09850
OsAffx.3178.1.S1_at--777--8931Chr03:4881818..4881842 (25 bp)
TGACGTACAAGCTGCACCGCGGGCT
LOC_Os03g09850
OsAffx.3178.1.S1_at--751--8471Chr03:4881755..4881779 (25 bp)
TGGCGATGCTGTTCCGGCCGAAGAC
LOC_Os03g09850
OsAffx.3178.1.S1_at--769--5311Chr03:4881736..4881760 (25 bp)
GAAGACGACGAACCGGTACCGCAAG
LOC_Os03g09850
OsAffx.3178.1.S1_at--968--1751Chr03:4881719..4881743 (25 bp)
ACCGCAAGTACTGGAAGTCGTACCA
LOC_Os03g09850
OsAffx.3178.1.S1_at--649--5311Chr03:4881706..4881730 (25 bp)
GAAGTCGTACCACCACCTGGTTGGG
LOC_Os03g09850
OsAffx.3178.1.S1_at--116--3791Chr03:4881624..4881648 (25 bp)
CTCGGCGCGTCCTACTGGAAGCTGG
LOC_Os03g09850
OsAffx.3178.1.S1_at--1126--4291Chr03:4881614..4881638 (25 bp)
CCTACTGGAAGCTGGGCTACTGCAT
LOC_Os03g09850
OsAffx.3178.1.S1_at--640--6131Chr03:4881552..4881576 (25 bp)
GAGGTGAACGCCTGGGTCGTCTTCT
LOC_Os03g09850
Target Sequence 
ACGGCGTCCGCCACGCTGCAGTGGACGCACGGGTCACTGAACGCCCTGTCGTGGGGCTTCCTCCTCCCCGTCGGCGCGGC
GGTGGCGCGGTACCTGCGGCCGTGCGCGTCGACCGGGCCGGCGTGGTTCTACGCGCACGCGGCGATACAGGCGACGGGGT
ACGCCCTGGGCGCGGCCGGGTTCGCGCTGGGGCTGGTGATGGGGTCGGCGTCGCCGGGGGTGACGTACAAGCTGCACCGC
GGGCTGGGCATCGCGGCGGCGACGGCGGGGAGCCTGCAGACGCTGGCGATGCTGTTCCGGCCGAAGACGACGAACCGGTA
CCGCAAGTACTGGAAGTCGTACCACCACCTGGTTGGGTACGGGTGCGTGGTGGTCGGGGTGGTGAACGTGTTCCAGGGGT
TCGAGGTGATGGGGCTCGGCGCGTCCTACTGGAAGCTGGGCTACTGCATGGCGCTGGCCACGCTGGCCGGCGGCTGCGTG
GCGCTGGAGGTGAACGCCTGGGTCGTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis