Browse Element(s) Details


OsAffx.31892.3.S1_at

Description gb:NM_186958.1
DB_XREF= gi:34901001
GEN=P0046D03.26
TID=OsAffx.31892.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) gag-pol polyprotein-like (P0046D03.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1583010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g203702/11retrotransposon protein, putative, unclassified
LOC_Os02g262802/11hypothetical protein
LOC_Os06g290001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g198901/11retrotransposon protein, putative, LINE subclass
LOC_Os03g403601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g277301/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15790NANA7+9165791..9168833transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15800Os.14491.2.S1_x_at4/117+9170455..9175486transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15800Os.47463.1.S1_x_at3/117+9170455..9175486transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15809NANA7+9180882..9181436NA
LOC_Os07g15820OsAffx.20930.1.S1_at11/117+9187199..9187566hypothetical protein
LOC_Os07g15830OsAffx.31892.3.S1_at10/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15830OsAffx.31892.1.S1_x_at4/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15830OsAffx.4864.1.S1_at1/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15840OsAffx.8326.1.S1_x_at1/117+9200654..9203217hypothetical protein
LOC_Os07g15840OsAffx.19950.1.S1_at1/117+9200654..9203217hypothetical protein
LOC_Os07g15850OsAffx.4856.1.S1_x_at1/117+9204802..9210438retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g15860OsAffx.28468.1.S1_at2/117+9213420..9214479hypothetical protein
LOC_Os07g15870OsAffx.16286.1.S1_at11/117+9216446..9217637hypothetical protein
LOC_Os07g15880Os.9227.1.S1_a_at11/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15880OsAffx.3846.1.S1_at1/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31892.3.S1_at--566--2251Chr07:9194535..9194559 (25 bp)
AAATTTTGATATTGTCCCAATGCAA
LOC_Os07g15830
OsAffx.31892.3.S1_at--423--195Chr10:3135816..3135839 (24 bp)
ATTTGGTCAACCATGGATATATGAT
NONE
OsAffx.31892.3.S1_at--866--3013Chr10:3135848..3135867 (20 bp)
AATGCTTTGCATAATGATATTGCTA
NONE
OsAffx.31892.3.S1_at--178--7811Chr07:9194403..9194427 (25 bp)
GGTACCAATAAGTGTTGCTGAAATT
LOC_Os07g15830
OsAffx.31892.3.S1_at--1142--6479Chr11:13777971..13778193 (25 bp)
GATACTAATATTGCGATGCCTTCAA
NONE
OsAffx.31892.3.S1_at--1036--8891NONE
TGAGAACAACCAAATTGACGGCATT
NONE
OsAffx.31892.3.S1_at--1123--2232Chr07:9192918..9192940 (23 bp)
AAATTGACGGCATTATTTTGGCACT
LOC_Os07g15830
OsAffx.31892.3.S1_at--312--8251Chr07:9192899..9192923 (25 bp)
GGCACTTAACAATCGTCAACACCTA
LOC_Os07g15830
OsAffx.31892.3.S1_at--601--3051Chr07:9192889..9192913 (25 bp)
AATCGTCAACACCTATCTATAGCTC
LOC_Os07g15830
OsAffx.31892.3.S1_at--713--9851Chr07:9192539..9192809 (25 bp)
TACAACTACTCAAGGGATGGGTTCC
LOC_Os07g15830
OsAffx.31892.3.S1_at--480--9151Chr07:9192503..9192527 (25 bp)
TGCGAACACACCCTTATGCTACATT
LOC_Os07g15830
Target Sequence 
AAATTTTGATATTGTCCCAATGCAAGCATGTTCTTTGTTATTTGGTCAACCATGGATATATGATAATAATGCTTTGCATA
ATGATATTGCTAATACATACACATTTAGACATAATGGTCAAAAAATGAAATTGGTACCAATAAGTGTTGCTGAAATTTTC
GAAGATAATCTTGAAAGGATGAAGAATGGAATCGATGAAATTTACAAAGATAGTCTTGAAAGGATGAGGAATAGAATTGA
TGAGATTTTCAGAGATACCAAGAATGATACTAATATTGCGATGCCTTCAACTAAGTCTGAGTTATTACAAAACGAATGTA
TTGTTGTGCCTATTGCTTTGGATACTAATATTTTGCAGGCATCTGAGAACAACCAAATTGACGGCATTATTTTGGCACTT
AACAATCGTCAACACCTATCTATAGCTCCATGCATGCTTGAAGAATGTTCAATTGACCAAGCGTCTATAATTTCTGAAGA
TGAGAAAAAAGGTAATGATAATGGTGCTACAACTACTCAAGGGATGGGTTCCCATCCTCCACCTGCGAACACACCCTTAT
GCTACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31892.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis