Browse Element(s) Details


OsAffx.3199.1.S1_at

Description tigr:9631.m01034
TID=OsAffx.3199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1119011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11130OsAffx.22433.3.S1_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11130OsAffx.22433.3.S1_s_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11140Os.20190.1.S1_at11/113+5714116..5725348RhoGAP domain containing protein, expressed
LOC_Os03g11150OsAffx.3197.1.S1_at11/113+5726096..5727420hypothetical protein
LOC_Os03g11160OsAffx.3198.1.S1_at11/113+5729069..5729413expressed protein
LOC_Os03g11170NANA3+5732398..5732751Cystatin, putative
LOC_Os03g11180Os.57206.1.S1_at10/113+5734469..5735028Cystatin, putative, expressed
LOC_Os03g11190OsAffx.3199.1.S1_at11/113+5737209..5738515expressed protein
LOC_Os03g11200Os.19111.1.S1_at9/113+5739963..5746555Pre-mRNA processing protein prp39, putative, expressed
LOC_Os03g11210Os.9875.1.S1_at8/113+5749205..5751366cp protein, putative
LOC_Os03g11220OsAffx.12823.1.S1_s_at11/113+5753850..5755369expressed protein
LOC_Os03g11220Os.25984.1.S1_at11/113+5753850..5755369expressed protein
LOC_Os03g11230Os.53716.1.S1_at11/113+5756916..5758499expressed protein
LOC_Os03g11240OsAffx.25051.1.S1_at11/113+5759106..5767948Nucleotidyltransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3199.1.S1_at--418--8551Chr03:5737780..5737804 (25 bp)
TGGAGATCGCTTACCTGCAGTCGCA
LOC_Os03g11190
OsAffx.3199.1.S1_at--1002--2911Chr03:5737742..5737766 (25 bp)
AAGGAGCACTGCATTTCATCGGAAA
LOC_Os03g11190
OsAffx.3199.1.S1_at--1003--3491Chr03:5737726..5737750 (25 bp)
CATCGGAAATCATCGCAGGGAACCA
LOC_Os03g11190
OsAffx.3199.1.S1_at--16--2651Chr03:5737706..5737730 (25 bp)
AACCAAGAACAGCAAGCGGAAGCAT
LOC_Os03g11190
OsAffx.3199.1.S1_at--726--5391Chr03:5737688..5737712 (25 bp)
GAAGCATCGCTGACGCTGGGCAATG
LOC_Os03g11190
OsAffx.3199.1.S1_at--200--6871Chr03:5737629..5737653 (25 bp)
GTTTGTCGCGGTGATCTCCAAGGAA
LOC_Os03g11190
OsAffx.3199.1.S1_at--636--4611Chr03:5737591..5737615 (25 bp)
GCGAGGAGTTCTACACGAAGGAGAT
LOC_Os03g11190
OsAffx.3199.1.S1_at--107--991Chr03:5737573..5737597 (25 bp)
AGGAGATCGAGCACGATCAGCAGCA
LOC_Os03g11190
OsAffx.3199.1.S1_at--939--1271Chr03:5737441..5737465 (25 bp)
AGATCGGCGACCTGCGGTTCAGCCT
LOC_Os03g11190
OsAffx.3199.1.S1_at--480--8171Chr03:5737321..5737345 (25 bp)
GGAACACGCCGTCTCTGACGACGAC
LOC_Os03g11190
OsAffx.3199.1.S1_at--150--71Chr03:5737239..5737263 (25 bp)
ATTGCCTGGAGGCTGCCTGACACTG
LOC_Os03g11190
Target Sequence 
TGGAGATCGCTTACCTGCAGTCGCAGCTGCAGCAGGTGAAGGAGCACTGCATTTCATCGGAAATCATCGCAGGGAACCAA
GAACAGCAAGCGGAAGCATCGCTGACGCTGGGCAATGGCGACGCGGAGGCTGTGGTCGTCGCCGGCGGCGGGTTTGTCGC
GGTGATCTCCAAGGAAGACGACGGCGGCGGCGAGGAGTTCTACACGAAGGAGATCGAGCACGATCAGCAGCAGGCGGCCG
GGGCGGCGGGGCTCGCCGTCGCCGATGGGTACGTGCTCGTGGCGAAGAGCGACGGCGGCGACGCGGACCTGAAGGGGAAG
CTGGAGGCGGCGCGCGCGGAGATCGGCGACCTGCGGTTCAGCCTGGAGGAGGCGGTGAGGCGGGCGGAGCTGGCCGAGGA
GGCGAAGGCGGCGCTGGAGAGGGCGCTCAGGGAGGAGATCCAGAGGAAGGCGCAGCCGCGGAACACGCCGTCTCTGACGA
CGACGACGACGACTCCGGCGAAGCCGCCATTGACGGGGCCGAGAGGAGGCGACGGGAGGCCATTGCCTGGAGGCTGCCTG
ACACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis