Browse Element(s) Details


OsAffx.31995.1.S1_at

Description tigr:9640.m03200
TID=OsAffx.31995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3288011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32840OsAffx.31992.1.S1_at11/1112+19819131..19819800hypothetical protein
LOC_Os12g32850OsAffx.31993.1.S1_at11/1112+19820535..19822905Cytochrome P450 71E1, putative
LOC_Os12g32870OsAffx.31994.1.S1_at11/1112+19836837..19839307hypothetical protein
LOC_Os12g32880OsAffx.31995.1.S1_at11/1112+19842756..19844036hypothetical protein
LOC_Os12g32890OsAffx.19941.1.S1_at10/1112+19848235..19849516hypothetical protein
LOC_Os12g32900OsAffx.19942.1.S1_at11/1112+19851101..19852384hypothetical protein
LOC_Os12g32910OsAffx.7772.1.S1_at11/1112+19856619..19857178hypothetical protein
LOC_Os12g32910OsAffx.22011.1.S1_at1/1112+19856619..19857178hypothetical protein
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein
LOC_Os12g32930OsAffx.24546.1.S1_at9/1112+19865970..19867224hypothetical protein
LOC_Os12g32930Os.55390.1.S1_x_at4/1112+19865970..19867224hypothetical protein
LOC_Os12g32930OsAffx.12334.2.S1_at2/1112+19865970..19867224hypothetical protein
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31995.1.S1_at--903--6591Chr12:19843323..19843347 (25 bp)
GATTGTGCCACGAGGAATCCCAGCG
LOC_Os12g32880
OsAffx.31995.1.S1_at--473--6431Chr12:19843209..19843233 (25 bp)
GATCATTAGGATCCCTCGTTTTCAG
LOC_Os12g32880
OsAffx.31995.1.S1_at--1076--2571Chr12:19843112..19843136 (25 bp)
AACGGTGCTGCTGTCGGACCTGTGA
LOC_Os12g32880
OsAffx.31995.1.S1_at--833--1751Chr12:19843095..19843119 (25 bp)
ACCTGTGACAAGCTACGTGGTGCTC
LOC_Os12g32880
OsAffx.31995.1.S1_at--238--2771Chr12:19843045..19843069 (25 bp)
AAGACGTCGCGGTTCTCCAGAGGAA
LOC_Os12g32880
OsAffx.31995.1.S1_at--1085--1471Chr12:19842935..19842959 (25 bp)
AGCAATCACCGGTACACTAGCATGT
LOC_Os12g32880
OsAffx.31995.1.S1_at--728--10391Chr12:19842878..19842902 (25 bp)
TTTTGCTGCAAGTACTTCGCGATCT
LOC_Os12g32880
OsAffx.31995.1.S1_at--890--10631Chr12:19842863..19842887 (25 bp)
TTCGCGATCTGCTGCATGAGGCATT
LOC_Os12g32880
OsAffx.31995.1.S1_at--277--6211Chr12:19842846..19842870 (25 bp)
GAGGCATTGCAAAAACCCGTTGACT
LOC_Os12g32880
OsAffx.31995.1.S1_at--490--9931Chr12:19842811..19842835 (25 bp)
TACTGGCTGCATTCCTACTCTTGAG
LOC_Os12g32880
OsAffx.31995.1.S1_at--262--10771Chr12:19842791..19842815 (25 bp)
TTGAGCTTTTCTTGTACCTCCATGG
LOC_Os12g32880
Target Sequence 
GATTGTGCCACGAGGAATCCCAGCGGCAAGCGAGCTACAAGACAACGGTGTGAGATTCCGAGTGAGGGGATTGAGTGAGC
AGGTCAAAATGTTTGACGCGACATTTCAGGGTAAGATCATTAGGATCCCTCGTTTTCAGATAAATTTCGGCTCCAAGATC
CTACTGGCAAACCTCTTCGCTTACGATCAAATCAAGGGAGAACCAGCTGACAACGGTGCTGCTGTCGGACCTGTGACAAG
CTACGTGGTGCTCATGAACGCGCTCATCAACACCAGAGAAGACGTCGCGGTTCTCCAGAGGAAGGGCATCCTGGACAACC
TGCTGTCGAACGAGGACGAGGTGGCCTCCTTCTTCAACGAGCTCGGCAGGTGTGCGTTGGTGGATGTGAGCAATCACCGG
TACACTAGCATGTTCGAAGATGTCAACAGGTACTGGAGGAATGGGTTTTGCTGCAAGTACTTCGCGATCTGCTGCATGAG
GCATTGCAAAAACCCGTTGACTTGCCTCTCGTTACTGGCTGCATTCCTACTCTTGAGCTTTTCTTGTACCTCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis