Browse Element(s) Details


OsAffx.31997.1.S1_x_at

Description tigr:9640.m03211
TID=OsAffx.31997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC009176 putative heat-shock protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g329864/11Hsp90 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32970Os.51392.1.S1_s_at11/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32970Os.51737.1.S1_x_at2/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32980Os.21795.1.S1_s_at11/1112+19885823..19889406Potyvirus VPg interacting protein, putative, expressed
LOC_Os12g32986Os.12781.1.S1_at11/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32986OsAffx.31997.1.S1_x_at4/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32992Os.10532.1.S1_s_at11/1112+19899961..19904288expressed protein
LOC_Os12g33000OsAffx.20387.1.S1_x_at1/1112+19908431..19914477transposon protein, putative, unclassified
LOC_Os12g33010NANA12+19915611..19918441retrotransposon protein, putative, unclassified
LOC_Os12g33020Os.6051.1.S1_at10/1112+19919575..19924675mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009704biological_processde-etiolation
GO:0010157biological_processresponse to chlorate
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0009570cellular_componentchloroplast stroma
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31997.1.S1_x_at--42--10111Chr12:19893493..19893517 (25 bp)
TATGGCCAGCAAGTGGGCCTCGCAC
LOC_Os12g32986
OsAffx.31997.1.S1_x_at--844--9711Chr12:19893466..19893490 (25 bp)
TCAACCCGCTGAGATGAACCTGCAG
LOC_Os12g32986
OsAffx.31997.1.S1_x_at--346--8991Chr12:19893452..19893476 (25 bp)
TGAACCTGCAGCGAGACTCACCTGT
LOC_Os12g32986
OsAffx.31997.1.S1_x_at--983--1751Chr12:19893433..19893457 (25 bp)
ACCTGTCAGCTCTGAGCCGATTGAA
LOC_Os12g32986
OsAffx.31997.1.S1_x_at--1018--4031NONE
CGATTGAAGCCGAGCTTGCCGGCGA
NONE
OsAffx.31997.1.S1_x_at--119--10751Chr12:19891236..19891260 (25 bp)
TTGACGGCAGAGGAAACGAGCTTGA
NONE
OsAffx.31997.1.S1_x_at--321--5552Chr12:19891224..19891248 (25 bp)
GAAACGAGCTTGAGCTCGCCGACGA
NONE
OsAffx.31997.1.S1_x_at--894--4891Chr12:19891187..19891211 (25 bp)
GCTTGACAGCGGAGGAAACGAGCTT
NONE
OsAffx.31997.1.S1_x_at--322--5553Chr09:871352..871477 (25 bp)
GAAACGAGCTTGAGCTCGCCGGCGA
NONE
OsAffx.31997.1.S1_x_at--750--3791Chr12:19890943..19890967 (25 bp)
CTCGAGCTCGCCGATGGAGTCAGGC
NONE
OsAffx.31997.1.S1_x_at--223--10811Chr12:19890865..19890889 (25 bp)
TTGGGTAGCGGCATCGGTCACTGGG
NONE
Target Sequence 
TATGGCCAGCAAGTGGGCCTCGCACGCTCAACCCGCTGAGATGAACCTGCAGCGAGACTCACCTGTCAGCTCTGAGCCGA
TTGAAGCCGAGCTTGCCGGCGACCACGGGGAGGAGCTTGACGGCAGAGGAAACGAGCTTGAGCTCGCCGACGACCACGTG
GAGGAGCTTGACAGCGGAGGAAACGAGCTTGAGCTCGCCGGCGACCACAGGGAGGAACTTGGTGGCAGAGGGGATGAGCT
CGAGCTCGCCGGCGACCACGGGGAGGAACTTGGCGGTGGAGGGACGAGCTCGAGCTCGCCGGCGACCACGGGGAGGAGGG
CGATGGAGGAGACGAGCTCGAGCTTGCCGGCGGCGTTAGGCACAGGGGGAGGGACGGAGAGCGGCGGCGGCGCGTGGGAC
GAGCTCGAGCTCGAGCTCGCCGATGGAGTCAGGCGTGGGGGCAAGGAGAGGCGAAGAGCGGCGGGCCGACGGCGTCGGGC
GCTGGGGTTGGGTAGCGGCATCGGTCACTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31997.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis