Browse Element(s) Details


OsAffx.32007.1.S1_at

Description tigr:9640.m03265
TID=OsAffx.32007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3378011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33730OsAffx.30486.1.S1_at1/1112+20327049..20328454hypothetical protein
LOC_Os12g33740OsAffx.19950.1.S1_at11/1112+20329800..20330480Athila ORF 1, putative
LOC_Os12g33750Os.32823.1.S1_x_at2/1112+20336407..20336790hypothetical protein
LOC_Os12g33760OsAffx.7780.1.S1_x_at11/1112+20341321..20341560hypothetical protein
LOC_Os12g33770OsAffx.7781.1.S1_at10/1112+20342443..20343518hypothetical protein
LOC_Os12g33780OsAffx.32007.1.S1_at11/1112+20346345..20348699hypothetical protein
LOC_Os12g33790NANA12+20354629..20355279hypothetical protein
LOC_Os12g33800Os.24831.1.S1_x_at10/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.24831.3.S1_x_at7/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.53142.1.S1_at3/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.24831.3.S1_s_at1/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.24831.4.S1_x_at1/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33810NANA12+20360238..20362652retrotransposon protein, putative, unclassified
LOC_Os12g33820Os.40855.5.S1_x_at2/1112+20367061..20369732hypothetical protein
LOC_Os12g33830OsAffx.32007.2.S1_at11/1112+20371729..20373002F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32007.1.S1_at--980--1271Chr12:20347390..20347414 (25 bp)
AGATCATGTCGTTCGGCGACGCTGA
LOC_Os12g33780
OsAffx.32007.1.S1_at--236--9091Chr12:20347449..20347473 (25 bp)
TGCTACGCCGTCGATCATCTAAAAG
LOC_Os12g33780
OsAffx.32007.1.S1_at--442--2051Chr12:20348256..20348280 (25 bp)
ACTTCCCAGTGTTACGAGTTTCACA
LOC_Os12g33780
OsAffx.32007.1.S1_at--372--3991Chr12:20348304..20348328 (25 bp)
CGGGCACGCCGTAGGAGCAAGTATA
LOC_Os12g33780
OsAffx.32007.1.S1_at--761--1691Chr12:20348328..20348352 (25 bp)
AGCCAAGTTCATCGCTAAGTGCAAC
LOC_Os12g33780
OsAffx.32007.1.S1_at--129--3651Chr12:20348365..20348388 (24 bp)
CTTCGCATTGATTTTTCAGGCTGGT
LOC_Os12g33780
OsAffx.32007.1.S1_at--176--7011Chr12:20348507..20348531 (25 bp)
GTACTGTTCAGAACCAGGTTGCCTT
LOC_Os12g33780
OsAffx.32007.1.S1_at--320--10691Chr12:20348525..20348549 (25 bp)
TTGCCTTTGTCACCAGCCAGAGGAT
LOC_Os12g33780
OsAffx.32007.1.S1_at--1066--6911Chr12:20348589..20348613 (25 bp)
GTAGATATCCGTCGGTTTGCACCGT
LOC_Os12g33780
OsAffx.32007.1.S1_at--1138--8051Chr12:20348623..20348647 (25 bp)
GGAGAAGCCTCGTACAACTATTGTT
LOC_Os12g33780
OsAffx.32007.1.S1_at--719--2031Chr12:20348639..20348663 (25 bp)
ACTATTGTTTGCGAGTTCACCGGCT
LOC_Os12g33780
Target Sequence 
AGATCATGTCGTTCGGCGACGCTGACGACAACGCCGCCGCCGTCTGGCTCCTCAAGAACTGCTACGCCGTCGATCATCTA
AAAGTGAAACTAGAAATTCTTCTTGCGCAACAAGATGATGACGACATCATAAAGGATGTACCACAACTTCCCAGTGTTAC
GAGTTTCACAATAGAAGCAAGTTCGTGGTTTGACGGGCACGCCGTAGGAGCAAGTATAGCCAAGTTCATCGCTAAGTGCA
ACAATATCAAATACCTTCGCATTGATTTTTCAGGCTGGTATAACTTGTACTGTTCAGAACCAGGTTGCCTTTGTCACCAG
CCAGAGGATTGGAAAGACCAGATGATCTCATTGGAGAACCTAAGAGTGGTAGATATCCGTCGGTTTGCACCGTTGGATGA
CCGGAGAAGCCTCGTACAACTATTGTTTGCGAGTTCACCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis