Browse Element(s) Details


OsAffx.32008.1.S1_at

Description tigr:9640.m03280
TID=OsAffx.32008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3395011/11Myb-related protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33910Os.47999.3.A1_at5/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910Os.47999.3.A1_x_at3/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910Os.47999.2.A1_x_at2/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910OsAffx.20733.1.A1_x_at1/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.3.A1_at5/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.3.A1_x_at3/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.2.A1_x_at2/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.45173.1.S1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920OsAffx.20733.1.A1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33930OsAffx.19953.7.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32275.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32273.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.19953.6.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33939OsAffx.32277.1.S1_x_at5/1112+20430372..20430725hypothetical protein
LOC_Os12g33950OsAffx.32008.1.S1_at11/1112+20440473..20442136Myb-related protein, putative
LOC_Os12g33960OsAffx.32009.2.S1_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_s_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_x_at7/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32336.1.A1_at5/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32335.1.A1_at1/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g34080OsAffx.32277.1.S1_x_at11/1112+20448493..20450249expressed protein
LOC_Os12g34080OsAffx.1869.1.S1_at11/1112+20448493..20450249expressed protein
LOC_Os12g33980NANA12+20463491..20464756retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32008.1.S1_at--543--1611Chr12:20440504..20440528 (25 bp)
AGCTGTTCGAGAGGGCGCTGGCGAC
LOC_Os12g33950
OsAffx.32008.1.S1_at--827--5651Chr12:20440526..20440550 (25 bp)
GACATACGACAAAGACACGCCGGGC
LOC_Os12g33950
OsAffx.32008.1.S1_at--498--1851Chr12:20440531..20440555 (25 bp)
ACGACAAAGACACGCCGGGCCGCTG
LOC_Os12g33950
OsAffx.32008.1.S1_at--756--3911Chr12:20440553..20440577 (25 bp)
CTGGCAGAACGTGGCGCGGGCAGTG
LOC_Os12g33950
OsAffx.32008.1.S1_at--538--7351Chr12:20440602..20440626 (25 bp)
GTGAAGAGGCACTACGACAAGCTGC
LOC_Os12g33950
OsAffx.32008.1.S1_at--16--3651Chr12:20440626..20440650 (25 bp)
CTTCAAGACCTGCACCACATTGAGT
LOC_Os12g33950
OsAffx.32008.1.S1_at--323--1391Chr12:20440631..20440655 (25 bp)
AGACCTGCACCACATTGAGTCGGCA
LOC_Os12g33950
OsAffx.32008.1.S1_at--577--5071Chr12:20440637..20440661 (25 bp)
GCACCACATTGAGTCGGCAGGCCGT
LOC_Os12g33950
OsAffx.32008.1.S1_at--464--1711Chr12:20440639..20440663 (25 bp)
ACCACATTGAGTCGGCAGGCCGTCA
LOC_Os12g33950
OsAffx.32008.1.S1_at--50--7111Chr12:20440660..20440684 (25 bp)
GTCAGGGTTCCCAATACGGCGGCAG
LOC_Os12g33950
OsAffx.32008.1.S1_at--294--1071Chr12:20440663..20440687 (25 bp)
AGGGTTCCCAATACGGCGGCAGCAG
LOC_Os12g33950
Target Sequence 
AGCTGTTCGAGAGGGCGCTGGCGACATACGACAAAGACACGCCGGGCCGCTGGCAGAACGTGGCGCGGGCAGTGGGTGGT
GGAAAGACGGCCGAGGAGGTGAAGAGGCACTACGACAAGCTGCTTCAAGACCTGCACCACATTGAGTCGGCAGGCCGTCA
GGGTTCCCAATACGGCGGCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis