Browse Element(s) Details


OsAffx.32056.3.S1_x_at

Description tigr:9640.m03535
TID=OsAffx.32056.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Patatin-like phospholipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g365303/11Patatin-like phospholipase family protein
LOC_Os12g366101/11Patatin-like phospholipase family protein, expressed
LOC_Os03g276101/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36510NANA12+22316510..22319753retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36520OsAffx.7102.1.S1_at1/1112+22325584..22332148transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g36530OsAffx.32056.4.S1_x_at11/1112+22337508..22340055Patatin-like phospholipase family protein
LOC_Os12g36530OsAffx.32056.4.S1_at11/1112+22337508..22340055Patatin-like phospholipase family protein
LOC_Os12g36530OsAffx.32056.3.S1_x_at3/1112+22337508..22340055Patatin-like phospholipase family protein
LOC_Os12g36540NANA12+22341557..22341799hypothetical protein
LOC_Os12g36550NANA12+22346031..22351480retrotransposon protein, putative, unclassified
LOC_Os12g36560Os.28943.1.S1_x_at2/1112+22352121..22355346retrotransposon protein, putative, unclassified
LOC_Os12g36570OsAffx.24889.1.S1_at1/1112+22356275..22358960retrotransposon protein, putative, unclassified
LOC_Os12g36570Os.10728.1.S1_at1/1112+22356275..22358960retrotransposon protein, putative, unclassified
LOC_Os12g36570Os.37083.2.S1_at1/1112+22356275..22358960retrotransposon protein, putative, unclassified
LOC_Os12g36580Os.50833.1.S1_at2/1112+22359743..22365490transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g36580OsAffx.11394.1.S1_at2/1112+22359743..22365490transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32056.3.S1_x_at--668--3032Chr12:22339340..22339480 (25 bp)
AATCCTACGATGGTAGCCATGACGA
LOC_Os12g36530
OsAffx.32056.3.S1_x_at--241--1471Chr12:22293020..22293044 (25 bp)
AGAAGGCGCCGCTGCTCCTGACGAA
NONE
OsAffx.32056.3.S1_x_at--840--9851Chr12:22292922..22292946 (25 bp)
TACACGGCGGAGAAATGCTCCCGGT
NONE
OsAffx.32056.3.S1_x_at--651--4314Chr12:22339667..22339691 (25 bp)
CCATCATCGACATCTTCATGGCGGG
LOC_Os12g36530
OsAffx.32056.3.S1_x_at--153--8092Chr12:22339691..22339715 (25 bp)
GGAGCTCCGACATGGTCGACATCCA
LOC_Os12g36530
OsAffx.32056.3.S1_x_at--1141--1891Chr12:22292810..22292834 (25 bp)
ACGTCGGCGTCAATTTCCAGCTGTT
NONE
OsAffx.32056.3.S1_x_at--984--3111Chr12:22292799..22292823 (25 bp)
AATTTCCAGCTGTTCCACAGCGAGG
NONE
OsAffx.32056.3.S1_x_at--106--3811Chr12:22292766..22292790 (25 bp)
CTCCGCATCCAGGAGGACCAGGATG
NONE
OsAffx.32056.3.S1_x_at--937--951Chr12:22292753..22292777 (25 bp)
AGGACCAGGATGACTCGCTCAGGAG
NONE
OsAffx.32056.3.S1_x_at--26--1831Chr12:22292582..22292606 (25 bp)
ACGCGCTCGTCAGGATGGCCAGGAC
NONE
OsAffx.32056.3.S1_x_at--157--8451Chr12:22292567..22292591 (25 bp)
TGGCCAGGACGCTCTCCGAGGAGAA
NONE
Target Sequence 
AATCCTACGATGGTAGCCATGACGATGATCACGGAGGAGATGATAGCGGAGGAGAAGGCGCCGCTGCTCCTGACGAAGCC
GCCGGAGAAGGAGTGCGGCCGGTTCCTCGTCCTGTCCATCGGCACCGGACTGACCTCCGACGAGGGGCTGTACACGGCGG
AGAAATGCTCCCGGTGGGGGGCGCTCGGGTGGCTGCGGCACAGGGGGATGGCGCCCATCATCGACATCTTCATGGCGGGG
AGCTCCGACATGGTCGACATCCACGTCGGCGTCAATTTCCAGCTGTTCCACAGCGAGGGGAACTACCTCCGCATCCAGGA
GGACCAGGATGACTCGCTCAGGAGCACCGCGGCGGCGCTGGACGAGGCGACGCCGGAGAACATGAGGAAGCTCGTCGGCG
TCGGCGAGCGCATGCTGGGGCAGCAGGTGACGAGGGTCAACGTGGAGACCGGGAGGTACGAGAAGGTGCCCGACGAGGGG
AGCAACGCCGACGCGCTCGTCAGGATGGCCAGGACGCTCTCCGAGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32056.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis