Browse Element(s) Details


OsAffx.32071.1.S1_x_at

Description tigr:9640.m03651
TID=OsAffx.32071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Acyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3760011/11Acyltransferase family protein
LOC_Os11g454002/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37570Os.27404.1.A1_at11/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37570Os.57425.1.S1_x_at9/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37580Os.24641.1.A1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37580OsAffx.20001.1.S1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37590Os.53783.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37590Os.8542.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37610Os.11210.1.S1_at10/1112+23063456..23065827ribosomal protein S6 containing protein, expressed
LOC_Os12g37620OsAffx.22651.1.S1_x_at5/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_x_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37630Os.27401.1.S1_at11/1112+23068509..23071642Phospholipase/Carboxylesterase family protein, expressed
LOC_Os12g37640Os.10856.1.S1_at11/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37640Os.6323.2.S1_a_at1/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37650Os.8395.1.S1_at11/1112+23081951..23083004expressed protein
LOC_Os12g37660Os.8076.1.S1_at10/1112+23085267..23089159Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32071.1.S1_x_at--922--5091Chr12:23060024..23060048 (25 bp)
GCACGCTGATCGACCCGGTGTACGT
LOC_Os12g37600
OsAffx.32071.1.S1_x_at--379--8852Chr12:23060030..23060054 (25 bp)
TGATCGACCCGGTGTACGTGTCCAT
LOC_Os12g37600
OsAffx.32071.1.S1_x_at--807--7431Chr12:23060041..23060065 (25 bp)
GTGTACGTGTCCATCGCGCTGGACC
LOC_Os12g37600
OsAffx.32071.1.S1_x_at--536--7431Chr12:23060080..23060104 (25 bp)
GTGTCGTACAGCCTCAGCCGCGTCT
LOC_Os12g37600
OsAffx.32071.1.S1_x_at--405--5331Chr12:23060349..23060373 (25 bp)
GAAGTCCATGGACGCGCTGTGCTAC
LOC_Os12g37600
OsAffx.32071.1.S1_x_at--959--7251Chr12:23060367..23060391 (25 bp)
GTGCTACCTGGCCAACCCGAGGATG
LOC_Os12g37600
OsAffx.32071.1.S1_x_at--361--8451Chr12:23060375..23060399 (25 bp)
TGGCCAACCCGAGGATGTGCTACAC
LOC_Os12g37600
OsAffx.32071.1.S1_x_at--790--2611Chr12:23060380..23060404 (25 bp)
AACCCGAGGATGTGCTACACGGTGG
LOC_Os12g37600
OsAffx.32071.1.S1_x_at--651--771Chr12:23060389..23060413 (25 bp)
ATGTGCTACACGGTGGAGTTCCTCC
LOC_Os12g37600
OsAffx.32071.1.S1_x_at--156--3791Chr12:23060500..23060524 (25 bp)
CTCGGGTACGAGAGCACCATGCTCA
LOC_Os12g37600
OsAffx.32071.1.S1_x_at--51--1372Chr12:23060510..23060534 (25 bp)
AGAGCACCATGCTCACCAGGAAGGA
LOC_Os12g37600
Target Sequence 
GCACGCTGATCGACCCGGTGTACGTGTCCATCGCGCTGGACCGCCCCGTGCGCGCCGTGTCGTACAGCCTCAGCCGCGTC
TCCGACCTCCTCTCCCCGATCGGCGCCACCGTGCGCCTCGCCAGGGACCGCGCCCACGACGGCGCCGCCATGGCGCGCCT
CCTCGAGGCGGGGGCCCACGTCGTCGTCTGCCCCGAGGGGACCACCTGCCGGGAGCCGTACCTGCTGCGGTTCAGCCCGC
TGTTCGCGGAGCTCGCCGACGGCGTCGTGCCCGTGGCGCTCGCCGCCGAGGCGGCGGCGTTCCACGGCACGACGGCCGGC
GGGTGGAAGTCCATGGACGCGCTGTGCTACCTGGCCAACCCGAGGATGTGCTACACGGTGGAGTTCCTCCCCGCCGTCGA
CGCGTCGCCGGTGAGGGAGGGGAAGGCGGCGAGCACCGAGCTGGCCAACGCCGTGCAGCGGCGGGTGGCGGAGGCGCTCG
GGTACGAGAGCACCATGCTCACCAGGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32071.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis