Browse Element(s) Details


OsAffx.32080.1.S1_at

Description tigr:9640.m03722
TID=OsAffx.32080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to metallothionein-like protein type 1. (rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3829011/11Metallothionein-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38240NANA12+23456530..23457593transposon protein, putative, unclassified
LOC_Os12g38250OsAffx.7830.1.S1_at11/1112+23458352..23459049expressed protein
LOC_Os12g38260Os.53836.1.S1_at11/1112+23460907..23465702expressed protein
LOC_Os12g38270Os.9279.1.S1_at11/1112+23467876..23468826Metallothionein-like protein 1, putative, expressed
LOC_Os12g38280Os.27639.1.S1_x_at3/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38280Os.53731.1.S1_at2/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38290OsAffx.32080.1.S1_at11/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38290Os.17004.1.S1_at1/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.1.S1_a_at11/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.2.S1_x_at3/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38310Os.2313.1.S1_at10/1112+23483112..23484957Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os12g38320Os.56976.1.S1_at11/1112+23486429..23487681expressed protein
LOC_Os12g38330NANA12+23490722..23491093expressed protein
LOC_Os12g38340Os.50144.1.S1_at11/1112+23492984..23493616expressed protein
LOC_Os12g38350NANA12+23496846..23497298expressed protein
LOC_Os12g38360Os.5757.1.S1_at10/1112+23499024..23499651expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32080.1.S1_at--848--1731Chr12:23479395..23479419 (25 bp)
ACCATCACCACCTCAGATACCATGA
LOC_Os12g38290
OsAffx.32080.1.S1_at--134--3371Chr12:23479403..23479427 (25 bp)
CACCTCAGATACCATGATCCTCGGT
LOC_Os12g38290
OsAffx.32080.1.S1_at--739--1751Chr12:23479404..23479428 (25 bp)
ACCTCAGATACCATGATCCTCGGTG
LOC_Os12g38290
OsAffx.32080.1.S1_at--627--4291Chr12:23479405..23479429 (25 bp)
CCTCAGATACCATGATCCTCGGTGT
LOC_Os12g38290
OsAffx.32080.1.S1_at--678--3751Chr12:23479406..23479430 (25 bp)
CTCAGATACCATGATCCTCGGTGTT
LOC_Os12g38290
OsAffx.32080.1.S1_at--499--9651Chr12:23479407..23479431 (25 bp)
TCAGATACCATGATCCTCGGTGTTG
LOC_Os12g38290
OsAffx.32080.1.S1_at--958--3411Chr12:23479408..23479432 (25 bp)
CAGATACCATGATCCTCGGTGTTGC
LOC_Os12g38290
OsAffx.32080.1.S1_at--427--1271Chr12:23479409..23479433 (25 bp)
AGATACCATGATCCTCGGTGTTGCA
LOC_Os12g38290
OsAffx.32080.1.S1_at--1156--4131Chr12:23479582..23479606 (25 bp)
CGCGGCGAAGCGGTGTTCGAGGCTG
LOC_Os12g38290
OsAffx.32080.1.S1_at--714--4591Chr12:23479586..23479610 (25 bp)
GCGAAGCGGTGTTCGAGGCTGCTGC
LOC_Os12g38290
OsAffx.32080.1.S1_at--128--9291Chr12:23479615..23479639 (25 bp)
TCCGGTGAGGCCGACCATGGCTGCA
LOC_Os12g38290
Target Sequence 
ACCATCACCACCTCAGATACCATGATCCTCGGTGTTGCACCTGAAAAGGGGCGCGGCGAAGCGGTGTTCGAGGCTGCTGC
CGGCTCCGGTGAGGCCGACCATGGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis