Browse Element(s) Details


OsAffx.32124.1.S1_at

Description tigr:9640.m03991
TID=OsAffx.32124.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g408009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40750Os.55396.1.S1_at4/1112+25199689..25200446pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g40760Os.57207.1.S1_s_at11/1112+25201267..25202222expressed protein
LOC_Os12g40770Os.18059.1.S1_at10/1112+25202409..25207079TPR Domain containing protein, expressed
LOC_Os12g40780Os.51731.1.S1_at11/1112+25208796..25213131TPR Domain containing protein, expressed
LOC_Os12g40790Os.26794.1.S2_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40790Os.26794.1.S1_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40800OsAffx.32124.1.S1_at9/1112+25223568..25224627hypothetical protein
LOC_Os12g40810NANA12+25226095..25232085retrotransposon protein, putative, unclassified
LOC_Os12g40820NANA12+25232713..25235991retrotransposon protein, putative, unclassified
LOC_Os12g40830Os.7623.1.S1_at10/1112+25237928..25243410Pyridoxal kinase, putative, expressed
LOC_Os12g40840Os.9919.1.S1_s_at11/1112+25248685..25250749expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32124.1.S1_at--576--391Chr12:25224393..25224417 (25 bp)
ATCACCGTGTTCGACTCTCTGGTGT
LOC_Os12g40800
OsAffx.32124.1.S1_at--728--4231Chr12:25224389..25224413 (25 bp)
CCGTGTTCGACTCTCTGGTGTCGCC
LOC_Os12g40800
OsAffx.32124.1.S1_at--243--6071Chr12:25224351..25224375 (25 bp)
GAGTCAAATGACTCCGACGCCTACA
LOC_Os12g40800
OsAffx.32124.1.S1_at--79--2291Chr12:25224346..25224370 (25 bp)
AAATGACTCCGACGCCTACATCATG
LOC_Os12g40800
OsAffx.32124.1.S1_at--946--5791Chr12:25224336..25224360 (25 bp)
GACGCCTACATCATGCCGGTGGCGG
LOC_Os12g40800
OsAffx.32124.1.S1_at--615--4711Chr12:25224315..25224339 (25 bp)
GCGGCCATCCAGTTGTGTGACCCGT
LOC_Os12g40800
OsAffx.32124.1.S1_at--1095--3511Chr12:25224310..25224334 (25 bp)
CATCCAGTTGTGTGACCCGTCGCGG
LOC_Os12g40800
OsAffx.32124.1.S1_at--545--9231Chr12:25224308..25224332 (25 bp)
TCCAGTTGTGTGACCCGTCGCGGCG
LOC_Os12g40800
OsAffx.32124.1.S1_at--1138--4551Chr12:25224267..25224291 (25 bp)
GCGCCGAAGGTCACCGTTGTGCAGT
LOC_Os12g40800
OsAffx.32124.1.S1_at--72--2451NONE
AACAGTGGGAGGTTCAAGGGTTGAT
NONE
OsAffx.32124.1.S1_at--832--1011NONE
AGGTTCAAGGGTTGATTGGCTGGGC
NONE
Target Sequence 
ATCACCGTGTTCGACTCTCTGGTGTCGCCCGACGAGTGGTCGGAGTCAAATGACTCCGACGCCTACATCATGCCGGTGGC
GGCCATCCAGTTGTGTGACCCGTCGCGGCGCTACGAGGCGTTGGGCGCGCCGAAGGTCACCGTTGTGCAGTCGGTGAGGC
TGCTCGGCGCAGGGGGAACAACAGTGGGAGGTTCAAGGGTTGATTGGCTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis