Browse Element(s) Details


OsAffx.3221.1.S1_at

Description tigr:9631.m01249
TID=OsAffx.3221.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1319011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13130Os.53391.1.S1_at11/113+7067416..7071607ternary complex factor MIP1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_s_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_x_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13150Os.12191.1.S1_s_at2/113+7075783..7076623Non-symbiotic hemoglobin 3, putative
LOC_Os03g13160Os.12191.1.S1_s_at2/113+7079290..7080322Non-symbiotic hemoglobin 4, putative
LOC_Os03g13170Os.12772.1.S1_at11/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13170Os.51218.1.S1_at1/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13180OsAffx.3220.1.S1_at11/113+7086366..7087553Peroxidase 53 precursor, putative, expressed
LOC_Os03g13190OsAffx.3221.1.S1_at11/113+7090057..7094241transposon protein, putative, unclassified, expressed
LOC_Os03g13200Os.9893.1.S1_at11/113+7103982..7106242Peroxidase 53 precursor, putative, expressed
LOC_Os03g13210Os.159.1.S1_s_at11/113+7107383..7109455Peroxidase N precursor, putative, expressed
LOC_Os03g13220Os.9335.1.S1_at10/113+7111680..7115147expressed protein
LOC_Os03g13230Os.53534.1.S1_at11/113+7115764..7118010pentatricopeptide, putative, expressed
LOC_Os03g13240Os.11621.1.S1_at11/113+7118218..7122633Peptide transporter PTR2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3221.1.S1_at--694--6171Chr03:7093772..7093796 (25 bp)
GAGGAGTCCCTATAGCTCAGCAAGC
LOC_Os03g13190
OsAffx.3221.1.S1_at--887--9651Chr03:7093760..7093780 (21 bp)
TCAGCAAGCACAGCCCAAGGTCATT
LOC_Os03g13190
OsAffx.3221.1.S1_at--1077--2891Chr03:7093288..7093311 (24 bp)
AAGGTCATTCCACTACCAGCTGTAA
LOC_Os03g13190
OsAffx.3221.1.S1_at--867--8011Chr03:7093091..7093115 (25 bp)
GGAGGACTCTACAACAGTGGTTATT
LOC_Os03g13190
OsAffx.3221.1.S1_at--1046--991Chr03:7092513..7092537 (25 bp)
AGGATCCTTGTATGCACTTTGTCGA
LOC_Os03g13190
OsAffx.3221.1.S1_at--131--2051Chr03:7092498..7092522 (25 bp)
ACTTTGTCGATCATGGGTGCGTAAT
LOC_Os03g13190
OsAffx.3221.1.S1_at--4--6791Chr03:7092452..7092476 (25 bp)
GTTAGCATGCTCACTCGTTACAAAT
LOC_Os03g13190
OsAffx.3221.1.S1_at--313--1291Chr03:7092375..7092399 (25 bp)
AGATCCTAACAGGTTCTTACACGCC
LOC_Os03g13190
OsAffx.3221.1.S1_at--1109--1811Chr03:7092355..7092379 (25 bp)
ACGCCTCAATTGTCATTCTGGTGGT
LOC_Os03g13190
OsAffx.3221.1.S1_at--646--591Chr03:7092237..7092261 (25 bp)
ATGCCTGAATTTTCCTCTTACTACT
LOC_Os03g13190
OsAffx.3221.1.S1_at--3--8991Chr03:7092211..7092235 (25 bp)
TGAACGGACACACATTTGCTCTCTG
LOC_Os03g13190
Target Sequence 
GAGGAGTCCCTATAGCTCAGCAAGCACAGCCCAAGGTCATTCCACTACCAGCTGTAACTCCATCTCCTCAAGAGATCAAC
AACTCAAAAGATAGTGAAAGGAGCAAGGAGGACTCTACAACAGTGGTTATTAATGACCGTAAAGTTAACTTGATGGATAG
TGAGTCAGGATCCTTGTATGCACTTTGTCGATCATGGGTGCGTAATGGAGTTCCACATGAAAGTCAGGTTAGCATGCTCA
CTCGTTACAAATGAATGATTTGGGCACTTGCCATGTGAAAATTTCTCTATAGTTATGTTAAACTAGATCCTAACAGGTTC
TTACACGCCTCAATTGTCATTCTGGTGGTCTTATAATTTCTAGAGTTACTCTAAAGTGTATTTCTTCTCAGTTATAATTT
ATAAATGCAATTCTAGGACTACAACTTGATTGATTATGTTGTATGCCTGAATTTTCCTCTTACTACTTTGAACGGACACA
CATTTGCTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis