Browse Element(s) Details

OsAffx.32213.1.S1_x_at

Description

gb:X15901.1
DB_XREF= gi:11957
GEN=psaB
TID=OsAffx.32213.1
CNT=1
FEA=DNA_24
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PSI P700 apoprotein A2 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=PSI P700 apoprotein A2
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g38248	11/11	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750	6/11	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g38210	OsAffx.26050.13.S1_x_at	5/11	10	+	20135104..20135529	NAD, putative
LOC_Os10g38229	Os.26751.1.S1_s_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38229	OsAffx.32214.1.S1_x_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_x_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_s_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	Os.26751.2.S1_at	7/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38270	OsAffx.30475.3.S1_s_at	11/11	10	+	20148368..20149879	ATP synthase alpha chain, putative, expressed
LOC_Os10g38292	OsAffx.22955.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.22955.2.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32209.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.26770.2.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32208.1.S1_x_at	10/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_x_at	6/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38314	NA	NA	10	+	20155218..20156398	Glutathione S-transferase, N-terminal domain containing protein
LOC_Os10g38340	Os.9013.1.S1_at	11/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38340	Os.46634.1.S1_x_at	1/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38350	Os.46635.1.S1_x_at	11/11	10	+	20163648..20164516	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38360	Os.13015.1.S1_at	10/11	10	+	20168320..20169412	Glutathione S-transferase, N-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009768	biological_process	photosynthesis, light harvesting in photosystem I
GO:0009769	biological_process	photosynthesis, light harvesting in photosystem II
GO:0015979	biological_process	photosynthesis
GO:0009507	cellular_component	chloroplast
GO:0009535	cellular_component	thylakoid membrane (sensu Viridiplantae)
GO:0009538	cellular_component	photosystem I reaction center
GO:0009539	cellular_component	photosystem II reaction center
GO:0016168	molecular_function	chlorophyll binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.32213.1.S1_x_at--899--905	5	Chr10:20146727..20146751 (25 bp)	TGCTTTAGATGCACGCGGTTCCAAA	LOC_Os10g38248
OsAffx.32213.1.S1_x_at--905--791	5	Chr10:20146776..20146800 (25 bp)	GGATATAGTTTTCCTTGCGACGGCC	LOC_Os10g38248
OsAffx.32213.1.S1_x_at--822--723	5	Chr10:20146804..20146828 (25 bp)	GTCGCGGCGGTACTTGTGATATTTC	LOC_Os10g38248
OsAffx.32213.1.S1_x_at--92--741	5	Chr10:20146819..20146843 (25 bp)	GTGATATTTCTGCTTGGGACGCGTT	LOC_Os10g38248
OsAffx.32213.1.S1_x_at--332--581	4	Chr10:20146836..20146860 (25 bp)	GACGCGTTTTATTTGGCAGTTTTCT	LOC_Os10g38248
OsAffx.32213.1.S1_x_at--529--85	4	Chr10:20146919..20146943 (25 bp)	ATGGCAGGGCAACGTTTCACAATTT	LOC_Os10g38248
OsAffx.32213.1.S1_x_at--81--67	4	Chr10:20146945..20146969 (25 bp)	ATGAATCCTCCACTTATTTGATGGG	LOC_Os10g38248
OsAffx.32213.1.S1_x_at--651--865	4	Chr10:20147154..20147178 (25 bp)	TGGGCTCATGAACGGACACCTTTGG	LOC_Os10g38248
OsAffx.32213.1.S1_x_at--1076--753	4	Chr10:20147208..20147232 (25 bp)	GTGGCTCTTTCCATTGTGCAAGCAA	LOC_Os10g38248
OsAffx.32213.1.S1_x_at--752--13	4	Chr10:20147243..20147267 (25 bp)	ATTAGCTCACTTTTCCGTGGGTTAT	LOC_Os10g38248
OsAffx.32213.1.S1_x_at--17--1021	4	Chr10:20147267..20147291 (25 bp)	TATATTCACTTATGCCGCTTTCTTG	LOC_Os10g38248

Target Sequence

TGCTTTAGATGCACGCGGTTCCAAATTAATGCCGGATAAAAAAGATTTTGGATATAGTTTTCCTTGCGACGGCCCTGGTC
GCGGCGGTACTTGTGATATTTCTGCTTGGGACGCGTTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGATGGGTT
ACTTTTTATTGGCATTGGAAACACATCACATTATGGCAGGGCAACGTTTCACAATTTAATGAATCCTCCACTTATTTGAT
GGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGGATGAATAGTTTAT
CGGTATGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCGACTGGATTTATGTTCTTAATTTCCTGGCGTGGATAT
TGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATGAACGGACACCTTTGGCTAATTTAATTCGCTGGAGAGATAAGCC
CGTGGCTCTTTCCATTGTGCAAGCAAGATTGGTGGGATTAGCTCACTTTTCCGTGGGTTATATATTCACTTATGCCGCTT
TCTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis