Browse Element(s) Details


OsAffx.32220.1.A1_s_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rps15
TID=OsAffx.32220.1
CNT=1
FEA=DNA_81
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S15 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein S15
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g394601/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39410OsAffx.26175.1.S1_at1/117+23604247..23607276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g39420NANA7+23611029..23611592retrotransposon protein, putative, unclassified
LOC_Os07g39430Os.10501.1.S1_at10/117+23617995..23621471mTERF family protein, expressed
LOC_Os07g39440OsAffx.28821.1.S1_at11/117+23622670..23626254Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g39450OsAffx.16638.1.S1_at11/117+23631179..23631717hypothetical protein
LOC_Os07g39460OsAffx.5577.1.S1_at11/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39460OsAffx.32220.1.A1_s_at1/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os07g39480Os.18862.1.S1_at11/117+23652442..23657931SUSIBA2, putative, expressed
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32220.1.A1_s_at--812--2257Chr12:20895215..20895239 (25 bp)
AAATAAGCCAGCAAACGTTGACGTT
NONE
OsAffx.32220.1.A1_s_at--360--4357Chr12:20895221..20895245 (25 bp)
GCCAGCAAACGTTGACGTTTTCCCA
NONE
OsAffx.32220.1.A1_s_at--617--10659Chr12:20895240..20895264 (25 bp)
TTCCCAAAAGTCTTCGGAGACCTCT
NONE
OsAffx.32220.1.A1_s_at--954--7137Chr12:20895249..20895273 (25 bp)
GTCTTCGGAGACCTCTTTCCGATGA
NONE
OsAffx.32220.1.A1_s_at--378--2517Chr12:20895276..20895300 (25 bp)
AATCTTTTTTGTGTAATTCCAAATG
NONE
OsAffx.32220.1.A1_s_at--635--9218Chr12:20895293..20895317 (25 bp)
TCCAAATGTGAAGCAAGTCTCCGTA
NONE
OsAffx.32220.1.A1_s_at--298--7357Chr12:20895300..20895324 (25 bp)
GTGAAGCAAGTCTCCGTATCTTATT
NONE
OsAffx.32220.1.A1_s_at--1117--5176Chr12:20895305..20895329 (25 bp)
GCAAGTCTCCGTATCTTATTGGTGA
NONE
OsAffx.32220.1.A1_s_at--309--3815Chr12:20895311..20895335 (25 bp)
CTCCGTATCTTATTGGTGAAACTGA
NONE
OsAffx.32220.1.A1_s_at--775--10258Chr12:20895340..20895364 (25 bp)
TTGAAATTCAACAGAACCCCAGTTT
NONE
OsAffx.32220.1.A1_s_at--564--9698Chr12:20895347..20895371 (25 bp)
TCAACAGAACCCCAGTTTTCTTCTT
NONE
Target Sequence 
AAATAAGCCAGCAAACGTTGACGTTTTCCCAAAAGTCTTCGGAGACCTCTTTCCGATGAAAAATCTTTTTTGTGTAATTC
CAAATGTGAAGCAAGTCTCCGTATCTTATTGGTGAAACTGAATACTTGAAATTCAACAGAACCCCAGTTTTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32220.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis