Browse Element(s) Details


OsAffx.32260.1.S1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=petA
TID=OsAffx.32260.1
CNT=1
FEA=DNA_41
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome f (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=cytochrome f
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1528011/11Apocytochrome f precursor, putative
LOC_Os02g2460011/11NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os01g6591011/11Apocytochrome F, C-terminal family protein
LOC_Os10g212907/11Apocytochrome f precursor, putative
LOC_Os06g397306/11Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15250Os.26455.2.S1_s_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32331.1.S1_x_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32332.1.S1_x_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32333.1.S1_x_at7/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32334.1.S1_x_at5/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15260Os.26592.2.A1_s_at11/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.1.S1_s_at11/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.2.A1_x_at10/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.3.S1_x_at9/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15270OsAffx.32314.1.S1_at7/118+9269071..9269418ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g15270Os.48031.1.S1_x_at6/118+9269071..9269418ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g15280OsAffx.32260.1.S1_at11/118+9276495..9277418Apocytochrome f precursor, putative
LOC_Os08g15280Os.29056.1.S1_s_at8/118+9276495..9277418Apocytochrome f precursor, putative
LOC_Os08g15290NANA8+9292658..9295196retrotransposon protein, putative, unclassified
LOC_Os08g15300OsAffx.9474.1.S1_x_at1/118+9295635..9300355retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15310NANA8+9301603..9304490transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0009775biological_processphotosynthetic electron transport in cytochrome b6/f
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009512cellular_componentcytochrome b6f complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
GO:0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32260.1.S1_at--1147--4198Chr12:5636400..5636424 (25 bp)
CCCCGACCCTGCTATGAAGAAAGAC
NONE
OsAffx.32260.1.S1_at--1148--4197Chr12:5636401..5636425 (25 bp)
CCCGACCCTGCTATGAAGAAAGACG
NONE
OsAffx.32260.1.S1_at--453--4217Chr12:5636402..5636426 (25 bp)
CCGACCCTGCTATGAAGAAAGACGT
NONE
OsAffx.32260.1.S1_at--361--4077Chr12:5636403..5636427 (25 bp)
CGACCCTGCTATGAAGAAAGACGTT
NONE
OsAffx.32260.1.S1_at--696--5818Chr12:5636404..5636428 (25 bp)
GACCCTGCTATGAAGAAAGACGTTC
NONE
OsAffx.32260.1.S1_at--542--4277Chr12:5636407..5636431 (25 bp)
CCTGCTATGAAGAAAGACGTTCATT
NONE
OsAffx.32260.1.S1_at--1155--5558Chr12:5636418..5636442 (25 bp)
GAAAGACGTTCATTTCTTAAAATAT
NONE
OsAffx.32260.1.S1_at--358--7059Chr12:5636501..5636525 (25 bp)
GTAACAATACGGTCTATAATGCAAC
NONE
OsAffx.32260.1.S1_at--975--9779Chr12:5636502..5636526 (25 bp)
TAACAATACGGTCTATAATGCAACG
NONE
OsAffx.32260.1.S1_at--597--3179Chr12:5636505..5636529 (25 bp)
CAATACGGTCTATAATGCAACGTCA
NONE
OsAffx.32260.1.S1_at--177--319Chr12:5636507..5636531 (25 bp)
ATACGGTCTATAATGCAACGTCAAC
NONE
Target Sequence 
CCCCGACCCTGCTATGAAGAAAGACGTTCATTTCTTAAAATATCCCATATATGTGGGGGGAAACCGAGGAAGGGGACAGA
TCTATCCTGATGGTAGCAAGAGTAACAATACGGTCTATAATGCAACGTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis