Browse Element(s) Details


OsAffx.32273.1.S1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=nad3
TID=OsAffx.32273.1
CNT=1
FEA=DNA_20
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NADH dehydrogenase subunit 3 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=NADH dehydrogenase subunit 3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3393011/11Ribosomal protein S12 containing protein
LOC_Os12g3407011/11Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os02g469569/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33890NANA12+20400074..20402999retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33900Os.10703.2.S1_x_at1/1112+20403315..20406201retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910Os.47999.3.A1_at5/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910Os.47999.3.A1_x_at3/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910Os.47999.2.A1_x_at2/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910OsAffx.20733.1.A1_x_at1/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.3.A1_at5/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.3.A1_x_at3/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.2.A1_x_at2/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.45173.1.S1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920OsAffx.20733.1.A1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33930OsAffx.19953.7.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32275.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32273.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.19953.6.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33939OsAffx.32277.1.S1_x_at5/1112+20430372..20430725hypothetical protein
LOC_Os12g33950OsAffx.32008.1.S1_at11/1112+20440473..20442136Myb-related protein, putative
LOC_Os12g33960OsAffx.32009.2.S1_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_s_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_x_at7/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32336.1.A1_at5/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32335.1.A1_at1/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g34080OsAffx.32277.1.S1_x_at11/1112+20448493..20450249expressed protein
LOC_Os12g34080OsAffx.1869.1.S1_at11/1112+20448493..20450249expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0006412biological_processprotein biosynthesis
GO:0045333biological_processcellular respiration
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005740cellular_componentmitochondrial envelope
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32273.1.S1_at--777--415Chr12:20549847..20549871 (25 bp)
ATCTTGGTCCATGATGGCCTTTTTA
LOC_Os12g34070
OsAffx.32273.1.S1_at--1081--9575Chr12:20549848..20549872 (25 bp)
TCTTGGTCCATGATGGCCTTTTTAT
LOC_Os12g34070
OsAffx.32273.1.S1_at--616--3615Chr12:20549849..20549873 (25 bp)
CTTGGTCCATGATGGCCTTTTTATT
LOC_Os12g34070
OsAffx.32273.1.S1_at--540--7276Chr12:20549853..20549877 (25 bp)
GTCCATGATGGCCTTTTTATTGATT
LOC_Os12g34070
OsAffx.32273.1.S1_at--942--4335Chr12:20549855..20549879 (25 bp)
CCATGATGGCCTTTTTATTGATTTT
LOC_Os12g34070
OsAffx.32273.1.S1_at--805--3516Chr12:20549856..20549880 (25 bp)
CATGATGGCCTTTTTATTGATTTTG
LOC_Os12g34070
OsAffx.32273.1.S1_at--992--8876Chr12:20658115..20658139 (25 bp)
TGATGGCCTTTTTATTGATTTTGAC
NONE
OsAffx.32273.1.S1_at--888--876Chr12:20658117..20658141 (25 bp)
ATGGCCTTTTTATTGATTTTGACGA
NONE
OsAffx.32273.1.S1_at--1064--8416Chr12:20658119..20658143 (25 bp)
GGCCTTTTTATTGATTTTGACGATT
NONE
OsAffx.32273.1.S1_at--351--4456Chr12:20658120..20658144 (25 bp)
GCCTTTTTATTGATTTTGACGATTG
NONE
OsAffx.32273.1.S1_at--157--10795Chr12:20658129..20658153 (25 bp)
TTGATTTTGACGATTGGATTTCTCT
NONE
Target Sequence 
ATCTTGGTCCATGATGGCCTTTTTATTGATTTTGACGATTGGATTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis