Browse Element(s) Details


OsAffx.32289.1.S1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=rps13
TID=OsAffx.32289.1
CNT=1
FEA=DNA_31
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein S13 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Ribosomal protein S13
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g277301/11transposon protein, putative, Mutator sub-class
LOC_Os07g407601/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27680NANA4+16176033..16178979retrotransposon protein, putative, unclassified
LOC_Os04g27690OsAffx.14002.1.S1_at11/114+16183698..16184229hypothetical protein
LOC_Os04g27700OsAffx.26189.1.S1_at11/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.29788.1.S1_x_at2/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.21269.1.S1_x_at1/114+16184756..16185282expressed protein
LOC_Os04g27710NANA4+16188132..16191789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27720OsAffx.26190.1.S1_at11/114+16192873..16197397Terpene synthase, N-terminal domain containing protein
LOC_Os04g27730OsAffx.31892.1.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.32289.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.7216.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.3.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27740OsAffx.14003.1.S1_at10/114+16210272..16211412hypothetical protein
LOC_Os04g27750NANA4+16214751..16215310expressed protein
LOC_Os04g27760NANA4+16220057..16223444Terpene synthase family, metal binding domain containing protein
LOC_Os04g27770OsAffx.3921.1.S1_x_at11/114+16226562..16227224hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32289.1.S1_at--648--5511Chr12:13407812..13407836 (25 bp)
GAACAAGTCAGAATTGCCTCAACAA
NONE
OsAffx.32289.1.S1_at--842--12Chr01:3073601..3073625 (25 bp)
ATTGGACCGAAAAAAGCCATTCAGC
NONE
OsAffx.32289.1.S1_at--596--1692Chr01:3073615..3073639 (25 bp)
AGCCATTCAGCTTCGTTATCGATTA
NONE
OsAffx.32289.1.S1_at--812--511Chr12:13407745..13407769 (25 bp)
ATCGATTAGGTATCAGTGGGAACAT
NONE
OsAffx.32289.1.S1_at--259--6771Chr12:13407708..13407732 (25 bp)
GTTAACTAAGTATCAGATCGACCAA
NONE
OsAffx.32289.1.S1_at--214--6491Chr12:13407673..13407696 (24 bp)
GATAGCTCAAGATCATGTTGTTCAT
NONE
OsAffx.32289.1.S1_at--317--5971NONE
GAGAACGAGCAGACATCGAACGATT
NONE
OsAffx.32289.1.S1_at--622--9735Chr07:24423400..24423476 (25 bp)
TAATTTCTATTTCTCGTTATCGTGG
LOC_Os07g40760
OsAffx.32289.1.S1_at--735--9391NONE
TCGTTATCGTGGAATTCGTCATCAA
NONE
OsAffx.32289.1.S1_at--499--371NONE
ATCAAGATGGATCGCCCTTACGCGG
NONE
OsAffx.32289.1.S1_at--784--3651NONE
CTTACGCGGTCAACGAACTCATACT
NONE
Target Sequence 
GAACAAGTCAGAATTGCCTCAACAAAAATGGATGGAATTGGACCGAAAAAAGCCATTCAGCTTCGTTATCGATTAGGTAT
CAGTGGGAACATCAAGATGAATGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGCTCAAGATCATGTTG
TTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTAATTTCTATTTCTCGTTATCGTGGAATTCGTCAT
CAAGATGGATCGCCCTTACGCGGTCAACGAACTCATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis