Browse Element(s) Details


OsAffx.32313.1.S1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rpl20
TID=OsAffx.32313.1
CNT=1
FEA=DNA_51
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L20 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein L20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g280205/11prolyl oligopeptidase family protein, expressed
LOC_Os03g246101/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28000Os.55787.1.S1_at11/1110+14176312..14179391Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os10g28020Os.28089.1.S2_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.56061.1.S1_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.28089.1.S1_at10/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_at5/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.24407.1.S1_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_x_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32245.1.A1_at2/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.26688.1.S2_s_at1/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.2.S1_s_at11/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.1.S1_at9/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030OsAffx.11282.1.S1_at1/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28040Os.21782.2.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_x_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050Os.3121.1.S1_at11/1110+14229567..14230776Chitinase 2, putative, expressed
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32313.1.S1_at--135--1855Chr10:14204505..14204529 (25 bp)
ACGACGGGCAAAAATGCGTTCATTT
LOC_Os10g28020
OsAffx.32313.1.S1_at--223--2295Chr10:14204516..14204540 (25 bp)
AAATGCGTTCATTTGCCTCAAACTT
LOC_Os10g28020
OsAffx.32313.1.S1_at--1098--575Chr10:14204518..14204541 (24 bp)
ATGCGTTCATTTGCCTCAAACTTTA
LOC_Os10g28020
OsAffx.32313.1.S1_at--1152--4635Chr10:14204520..14204541 (22 bp)
GCGTTCATTTGCCTCAAACTTTAGA
LOC_Os10g28020
OsAffx.32313.1.S1_at--461--10555Chr10:14204523..14204666 (25 bp)
TTCATTTGCCTCAAACTTTAGAGGG
LOC_Os10g28020
OsAffx.32313.1.S1_at--242--7515Chr08:9270417..9270441 (25 bp)
GGGCTCATTTAAGACTTAATCGAAT
NONE
OsAffx.32313.1.S1_at--441--6474Chr08:9270532..9270556 (25 bp)
GATAAACGCAGCAACGCGGATACAT
NONE
OsAffx.32313.1.S1_at--711--5055Chr08:9270539..9270563 (25 bp)
GCAGCAACGCGGATACATAAAGTAT
NONE
OsAffx.32313.1.S1_at--428--1495Chr08:9270541..9270565 (25 bp)
AGCAACGCGGATACATAAAGTATTC
NONE
OsAffx.32313.1.S1_at--959--9755Chr08:9270616..9270640 (25 bp)
TAATCGTAAAATCCTTGCACAAGTA
NONE
OsAffx.32313.1.S1_at--14--2294Chr08:9270624..9270648 (25 bp)
AAATCCTTGCACAAGTAGCTGTATT
NONE
Target Sequence 
ACGACGGGCAAAAATGCGTTCATTTGCCTCAAACTTTAGAGGGGCTCATTTAAGACTTAATCGAATGATTACTCAACAGG
TAAGAAGAGCGTTTGTTTCCTCTCATCGAGATAGAGTCAGGCAAAAGAGGGATTTTCGGCGTTTGTGGATCAGTCGGATA
AACGCAGCAACGCGGATACATAAAGTATTCGATAATTATAGTAAATTAATACACAATCTTTACAAGAAAGAATTGATTCT
TAATCGTAAAATCCTTGCACAAGTAGCTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis