Browse Element(s) Details


OsAffx.3389.1.S1_x_at

Description tigr:9631.m03173
TID=OsAffx.3389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3243011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32380Os.46610.1.A1_x_at4/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32380OsAffx.29073.1.S1_x_at3/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32390OsAffx.13157.1.S1_at11/113+18482987..18484302hypothetical protein
LOC_Os03g32400Os.57162.1.S1_x_at11/113+18485450..18486362expressed protein
LOC_Os03g32400Os.57162.1.S1_at11/113+18485450..18486362expressed protein
LOC_Os03g32410OsAffx.13158.1.S1_at8/113+18490260..18492227hypothetical protein
LOC_Os03g32420Os.55531.1.S1_at10/113+18493855..18494861expressed protein
LOC_Os03g32430OsAffx.3389.1.S1_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32430OsAffx.3389.1.S1_x_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32440NANA3+18504330..18507343expressed protein
LOC_Os03g32450NANA3+18510410..18510868hypothetical protein
LOC_Os03g32460OsAffx.25340.1.S1_at11/113+18514036..18516708expressed protein
LOC_Os03g32460OsAffx.29269.1.S1_at1/113+18514036..18516708expressed protein
LOC_Os03g32470Os.9776.1.S1_a_at11/113+18524368..18527092oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3389.1.S1_x_at--482--5232Chr03:18499165..18499189 (25 bp)
GAATACGGCTTTGGCTATGACTTGT
LOC_Os03g32430
OsAffx.3389.1.S1_x_at--850--1931Chr03:18499169..18499193 (25 bp)
ACGGCTTTGGCTATGACTTGTTACT
LOC_Os03g32430
OsAffx.3389.1.S1_x_at--870--4871Chr03:18499172..18499196 (25 bp)
GCTTTGGCTATGACTTGTTACTGGG
LOC_Os03g32430
OsAffx.3389.1.S1_x_at--807--8651Chr03:18499838..18499861 (24 bp)
TGTGGCACTCGGTGACGCGCCGCCA
LOC_Os03g32430
OsAffx.3389.1.S1_x_at--864--7611Chr03:18499864..18499888 (25 bp)
GGGAAGGGTAGATGCCATTCCTAGA
LOC_Os03g32430
OsAffx.3389.1.S1_x_at--552--7691Chr03:18499869..18499893 (25 bp)
GGGTAGATGCCATTCCTAGAAATCA
LOC_Os03g32430
OsAffx.3389.1.S1_x_at--784--6351Chr03:18499874..18499898 (25 bp)
GATGCCATTCCTAGAAATCAGATTA
LOC_Os03g32430
OsAffx.3389.1.S1_x_at--496--10012Chr12:20517907..20517930 (24 bp)
TAGAAATCAGATTAGCTCCCAAGAA
NONE
OsAffx.3389.1.S1_x_at--1024--4773Chr12:20517920..20517943 (24 bp)
GCTCCCAAGAATACTGCAAACCCTT
NONE
OsAffx.3389.1.S1_x_at--980--9011Chr03:18499913..18499937 (25 bp)
TGCAAACCCTTCAATGGACTTGTGG
LOC_Os03g32430
OsAffx.3389.1.S1_x_at--374--831Chr03:18499926..18499950 (25 bp)
ATGGACTTGTGGAACGAACAGTCGG
LOC_Os03g32430
Target Sequence 
GAATACGGCTTTGGCTATGACTTGTTACTGGGGCCTGTGGCACTCGGTGACGCGCCGCCACGGGGAAGGGTAGATGCCAT
TCCTAGAAATCAGATTAGCTCCCAAGAATACTGCAAACCCTTCAATGGACTTGTGGAACGAACAGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3389.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis