Browse Element(s) Details


OsAffx.3401.1.S1_at

Description tigr:9631.m03344
TID=OsAffx.3401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g434501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein
LOC_Os01g43430Os.51609.1.S1_at10/111+25177291..25178063expressed protein
LOC_Os01g43440OsAffx.23646.1.S1_at11/111+25182785..25184269Leucine Rich Repeat family protein
LOC_Os01g43450OsAffx.3401.1.S1_at1/111+25187099..25187723hypothetical protein
LOC_Os01g43460Os.23040.1.S1_at11/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g43460Os.5608.3.S1_x_at1/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3401.1.S1_at--2--8372Chr03:19372815..19372839 (25 bp)
GGCGTGGACAGGACCGTGGACGGCA
NONE
OsAffx.3401.1.S1_at--774--3931Chr03:19373045..19373069 (25 bp)
CGGCGTTCACTGTGGCACGGCGATT
NONE
OsAffx.3401.1.S1_at--777--7531Chr03:19373056..19373080 (25 bp)
GTGGCACGGCGATTTGGCTTCCGAT
NONE
OsAffx.3401.1.S1_at--1072--1911Chr03:19373061..19373085 (25 bp)
ACGGCGATTTGGCTTCCGATTCCGC
NONE
OsAffx.3401.1.S1_at--661--7211Chr03:19373090..19373114 (25 bp)
GTCGATTCCGATTCCATCGATTCTG
NONE
OsAffx.3401.1.S1_at--249--91Chr03:19373100..19373124 (25 bp)
ATTCCATCGATTCTGCCTATGCTGA
NONE
OsAffx.3401.1.S1_at--768--6571Chr03:19373108..19373132 (25 bp)
GATTCTGCCTATGCTGATTCATCCT
NONE
OsAffx.3401.1.S1_at--992--10131Chr03:19373117..19373141 (25 bp)
TATGCTGATTCATCCTCGACCTCCG
NONE
OsAffx.3401.1.S1_at--351--111Chr03:19373145..19373169 (25 bp)
ATTCGGCTTCCACCGGCGATTCTGC
NONE
OsAffx.3401.1.S1_at--1016--10591Chr03:19373164..19373188 (25 bp)
TTCTGCCTCTACCATGCCAGGAGTA
NONE
OsAffx.3401.1.S1_at--699--4331Chr03:19373175..19373199 (25 bp)
CCATGCCAGGAGTAGAGGTGGCCAA
NONE
Target Sequence 
GGCGTGGACAGGACCGTGGACGGCACGGCCAGGTCGCGCTCGGCTGGGCGTCGAGCGCCGGAGCTTGCGCCGGAGTTCGA
CGGCTCTAGCTTGCGGTGGAAGAAGGTGAAGGCGGCAGAGCGGCGTTCACTGTGGCACGGCGATTTGGCTTCCGATTCCG
CCTCCGTCGATTCCGATTCCATCGATTCTGCCTATGCTGATTCATCCTCGACCTCCGCCGATTCGGCTTCCACCGGCGAT
TCTGCCTCTACCATGCCAGGAGTAGAGGTGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis