Browse Element(s) Details


OsAffx.3414.1.S1_at

Description tigr:9631.m03515
TID=OsAffx.3414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3671010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36660NANA3+20287250..20292110retrotransposon protein, putative, unclassified
LOC_Os03g36670Os.28943.1.S1_x_at2/113+20292734..20295965retrotransposon protein, putative, unclassified
LOC_Os03g36684OsAffx.9930.1.S1_at3/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36684OsAffx.8397.1.S1_at1/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36684OsAffx.534.1.S1_at1/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36684Os.1924.1.S1_at1/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36684Os.47130.4.A1_x_at1/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36684Os.27455.2.S1_at1/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36700OsAffx.17054.1.S1_at1/113+20303587..20307091retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36710OsAffx.3414.1.S1_at10/113+20308741..20312541hypothetical protein
LOC_Os03g36720NANA3+20315374..20317455retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36730Os.4055.1.S1_at11/113+20318154..20324666OST3/OST6 family protein, putative, expressed
LOC_Os03g36730OsAffx.661.1.S1_x_at1/113+20318154..20324666OST3/OST6 family protein, putative, expressed
LOC_Os03g36740NANA3+20329970..20331315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36750Os.6292.1.S1_at10/113+20334252..20341704HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3414.1.S1_at--867--5151Chr03:20309028..20309052 (25 bp)
GCAACGCCAGGGTAACGCCTACAAG
LOC_Os03g36710
OsAffx.3414.1.S1_at--309--7871Chr03:20310085..20310109 (25 bp)
GGTATTGCCGTATTACACAAACCCA
LOC_Os03g36710
OsAffx.3414.1.S1_at--311--2611NONE
AACCCATGTATAGGAGCCCATCTAA
NONE
OsAffx.3414.1.S1_at--973--1651Chr03:20312146..20312170 (25 bp)
AGCGCGGAGGAATCACCAAGTCCAA
LOC_Os03g36710
OsAffx.3414.1.S1_at--364--3211Chr03:20312168..20312192 (25 bp)
CAAGGACAACCTGGCTTCACTCTGG
LOC_Os03g36710
OsAffx.3414.1.S1_at--403--8231Chr03:20312191..20312215 (25 bp)
GGCAAGCTCTGCACTAGAACTACGG
LOC_Os03g36710
OsAffx.3414.1.S1_at--1042--8691Chr03:20312294..20312318 (25 bp)
TGTCCCTTGGGTCGCTGATAACCAA
LOC_Os03g36710
OsAffx.3414.1.S1_at--928--8811Chr03:20312309..20312333 (25 bp)
TGATAACCAAGCTGGAGACCGCCGC
LOC_Os03g36710
OsAffx.3414.1.S1_at--317--5911Chr03:20312334..20312358 (25 bp)
GAGCTCCCATGCAGACCAAGTAGAC
LOC_Os03g36710
OsAffx.3414.1.S1_at--285--591Chr03:20312391..20312415 (25 bp)
ATGCCACGTTCTTATGTGCCTCAAA
LOC_Os03g36710
OsAffx.3414.1.S1_at--894--2151Chr03:20312419..20312443 (25 bp)
ACACGCCCGGAGGTCAACATTGAAC
LOC_Os03g36710
Target Sequence 
GCAACGCCAGGGTAACGCCTACAAGGTGTTGGACGAAATGGCGATGAGGGATGTGGATACATTCTCATATACTATCGAGT
ATATGGTATTGCCGTATTACACAAACCCATGTATAGGAGCCCATCTAACGGAAGAGCGTGCGGACAACGCCAAGCTGCAG
GAGGAGATTGCCAGCGCGGAGGAATCACCAAGTCCAAGGACAACCTGGCTTCACTCTGGCAAGCTCTGCACTAGAACTAC
GGGCGCCTCGATGTGGCCGCAAAAGGGCCTGGGGATGAGCGTTCCTCATCCCGAGTTTCCTGACGAAACCACGGTCCTGG
TGTCCCTTGGGTCGCTGATAACCAAGCTGGAGACCGCCGCGAGCTCCCATGCAGACCAAGTAGACAAGGGAATGAGGTCT
AGGATCCAGACCGACGCATGCCACGTTCTTATGTGCCTCAAACTCACACGCCCGGAGGTCAACATTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis