Browse Element(s) Details


OsAffx.3432.1.S1_at

Description tigr:9631.m03663
TID=OsAffx.3432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g382008/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38170OsAffx.13228.1.S1_at11/113+21145945..21153622expressed protein
LOC_Os03g38190OsAffx.25410.1.S1_at10/113+21158714..21163393hypothetical protein
LOC_Os03g38200OsAffx.3432.1.S1_at8/113+21165682..21166479hypothetical protein
LOC_Os03g38210OsAffx.14939.1.S1_at10/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38210Os.57514.1.S1_x_at1/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38230Os.21210.1.S1_at11/113+21178638..21180566membrane-associated zinc metalloprotease family protein, expressed
LOC_Os03g38240OsAffx.25411.1.S1_at10/113+21183326..21186831hypothetical protein
LOC_Os03g38240OsAffx.9705.1.S1_x_at1/113+21183326..21186831hypothetical protein
LOC_Os03g38250OsAffx.13230.1.S1_at11/113+21188690..21192472NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3432.1.S1_at--363--2731Chr03:21166577..21166601 (25 bp)
AAGCACCCGGCGTCACAAGGAAGAT
NONE
OsAffx.3432.1.S1_at--100--1011Chr03:21166484..21166559 (25 bp)
AGGATCTGTGGAGTGCGACCACCTT
NONE
OsAffx.3432.1.S1_at--905--5831Chr03:21166468..21166492 (25 bp)
GACCACCTTGGTCATGGGAGAACAT
NONE
OsAffx.3432.1.S1_at--712--1431Chr03:21166450..21166474 (25 bp)
AGAACATGCTGAAGTGGCCACTGCC
LOC_Os03g38200
OsAffx.3432.1.S1_at--999--7451Chr03:21166388..21166412 (25 bp)
GTGTCGGCACCCGTATTGTGATTGC
LOC_Os03g38200
OsAffx.3432.1.S1_at--412--6591Chr03:21166298..21166393 (25 bp)
GATTGCCACCACTAGCATACTGATG
LOC_Os03g38200
OsAffx.3432.1.S1_at--543--8571Chr03:21166268..21166292 (25 bp)
TGGATCAAGATCATTCCCATCGCAT
LOC_Os03g38200
OsAffx.3432.1.S1_at--721--671Chr03:21166182..21166206 (25 bp)
ATGAACATGGCCTAGGCTTCCTTCT
LOC_Os03g38200
OsAffx.3432.1.S1_at--675--7931Chr03:21166149..21166173 (25 bp)
GGATTCTTGTTCGAGTTGACACCAC
LOC_Os03g38200
OsAffx.3432.1.S1_at--109--3371Chr03:21165993..21166017 (25 bp)
CACCGCTTGGTACCGAGCAGATAAA
LOC_Os03g38200
OsAffx.3432.1.S1_at--642--771Chr03:21165951..21165975 (25 bp)
ATGTCCATGTGTCAACCATCTGTGG
LOC_Os03g38200
Target Sequence 
AAGCACCCGGCGTCACAAGGAAGATGGACATAGCAGAAAACGAGGATCTGTGGAGTGCGACCACCTTGGTCATGGGAGAA
CATGCTGAAGTGGCCACTGCCCATGTCCCAAACGGCGTACTTCTTGGTGCGCGCTGTGGTGTCGGCACCCGTATTGTGAT
TGCCACCACTAGCATACTGATGATCCATGGATCAAGATCATTCCCATCGCATGATATGATCAAAATAAACCGTGACAAGA
AATTGGAGAACGTTGTAGGCTCCGGTGGTGTACATGAACATGGCCTAGGCTTCCTTCTTGCGGGTGGGATTCTTGTTCGA
GTTGACACCACAAGGGGAGGCCATGCCGCTGCAGTAGGTCCAATGGAAGATGAGGAAGGCATAGGAGAACACGTGAGGAA
GGGGATTGTGGAGAGAGTCGATGGGCCTGGGAGCCGAGCCAAGGAACCGCGCATCCTCGTCCCACCGCTTGGTACCGAGC
AGATAAAGTCGTTGGATCGTTATAATGTCCATGTGTCAACCATCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis