Browse Element(s) Details


OsAffx.3463.1.S1_at

Description tigr:9631.m03921
TID=OsAffx.3463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4077011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40720NANA3+22596254..22597654UDP-glucose 6-dehydrogenase, putative
LOC_Os03g40730NANA3+22597996..22600762retrotransposon protein, putative, unclassified
LOC_Os03g40740NANA3+22602046..22603484retrotransposon protein, putative, unclassified
LOC_Os03g40749NANA3+22604904..22605188hypothetical protein
LOC_Os03g40760Os.52238.1.S1_at3/113+22608654..22611556hypothetical protein
LOC_Os03g40760Os.49936.2.A1_at1/113+22608654..22611556hypothetical protein
LOC_Os03g40760Os.33601.3.S1_x_at1/113+22608654..22611556hypothetical protein
LOC_Os03g40760OsAffx.15708.1.S1_at1/113+22608654..22611556hypothetical protein
LOC_Os03g40770OsAffx.3463.1.S1_at11/113+22621331..22623646expressed protein
LOC_Os03g40780OsAffx.25458.1.S1_at11/113+22625469..22630287expressed protein
LOC_Os03g40780OsAffx.5900.1.S1_at1/113+22625469..22630287expressed protein
LOC_Os03g40790OsAffx.13272.1.S1_at11/113+22638605..22638883hypothetical protein
LOC_Os03g40800NANA3+22643748..22644934hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3463.1.S1_at--486--1451Chr03:22622936..22622960 (25 bp)
AGAAGCTTGTGAGGCAGTGCGACAT
LOC_Os03g40770
OsAffx.3463.1.S1_at--53--1531Chr03:22623141..22623162 (22 bp)
AGCAGGTGTATGAGCTGCACCGGCT
LOC_Os03g40770
OsAffx.3463.1.S1_at--912--8751Chr03:22623162..22623186 (25 bp)
TGTACCGCGTCCAGAAGCAGCTGAT
LOC_Os03g40770
OsAffx.3463.1.S1_at--654--6291Chr03:22623184..22623208 (25 bp)
GATGAGCGACCTCAACAGGTCGCCG
LOC_Os03g40770
OsAffx.3463.1.S1_at--479--1871Chr03:22623363..22623387 (25 bp)
ACGAGCTAGCGCTGACACTGGCCGT
LOC_Os03g40770
OsAffx.3463.1.S1_at--569--2211Chr03:22623420..22623444 (25 bp)
ACAAGCGGCGGGAGAGTAGCCCCTT
LOC_Os03g40770
OsAffx.3463.1.S1_at--1115--8031Chr03:22623430..22623454 (25 bp)
GGAGAGTAGCCCCTTCACGTCCAAC
LOC_Os03g40770
OsAffx.3463.1.S1_at--101--10511Chr03:22623443..22623467 (25 bp)
TTCACGTCCAACTGCTCGGGCGGGA
LOC_Os03g40770
OsAffx.3463.1.S1_at--800--4491Chr03:22623538..22623562 (25 bp)
GCCGTGCCCGAGAGCAATGGCATTC
LOC_Os03g40770
OsAffx.3463.1.S1_at--210--3211Chr03:22623552..22623576 (25 bp)
CAATGGCATTCGATGTGCTACATGA
LOC_Os03g40770
OsAffx.3463.1.S1_at--783--771Chr03:22623564..22623588 (25 bp)
ATGTGCTACATGACGGGTCGACGGC
LOC_Os03g40770
Target Sequence 
AGAAGCTTGTGAGGCAGTGCGACATGGAGGTCATGAAGATGGCCATGCTCAAGCATGAAGAGACTTTCAAGCAGCAGGTG
TATGAGCTGCACCGGCTGTACCGCGTCCAGAAGCAGCTGATGAGCGACCTCAACAGGTCGCCGCCGGAGCTAACCTGCCG
GCGGCGGCAGCGGCGCAAGCAGCACACCCGCCGCCGGGCGCTCAACCTGCAGCTCCCCGCCGACGAGTACATCGTCGTGG
CCGACGCCGGCGGCCAAGCGACGCCGCTGCCGCCGCCGCCGCCGTCGTCCAGGGAAGACGAGCTAGCGCTGACACTGGCC
GTCGGCGGCGGAGGCGCCGCCGGCAGGAGGAACAACAAGCGGCGGGAGAGTAGCCCCTTCACGTCCAACTGCTCGGGCGG
GAGCCTCACGACGGCGACATCGACGTCGACGTCGTCGTCGACCGACTCCGACGGCTCGCTCCGGCAGCCGCCGCCGTGCC
CGAGAGCAATGGCATTCGATGTGCTACATGACGGGTCGACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis