Browse Element(s) Details


OsAffx.3470.1.S1_at

Description tigr:9631.m03958
TID=OsAffx.3470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4116011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41120Os.54188.1.S1_at10/113+22811337..22816001expressed protein
LOC_Os03g41130Os.57170.1.S1_at11/113+22818103..22818679expressed protein
LOC_Os03g41140OsAffx.25464.1.S1_at11/113+22825513..22826543Transposable element protein, putative, Transposase_28
LOC_Os03g41150OsAffx.3469.1.S1_x_at11/113+22834620..22835063hypothetical protein
LOC_Os03g41154NANA3+22837036..22837236hypothetical protein
LOC_Os03g41160OsAffx.3470.1.S1_at11/113+22839409..22840241hypothetical protein
LOC_Os03g41170Os.53434.1.S1_at11/113+22847035..22850167expressed protein
LOC_Os03g41180Os.46306.1.S1_x_at8/113+22855491..22858586transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g41190Os.45976.1.S1_at5/113+22861252..22864563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g41190Os.45976.1.S1_x_at2/113+22861252..22864563transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3470.1.S1_at--1108--2231Chr03:22839581..22839605 (25 bp)
AAATTTGGCGCCACCGATGGATACC
LOC_Os03g41160
OsAffx.3470.1.S1_at--74--2611Chr03:22839740..22839764 (25 bp)
AACGCTGCGAATGAATCTGTCTGGT
LOC_Os03g41160
OsAffx.3470.1.S1_at--534--9011Chr03:22839764..22839788 (25 bp)
TGCAATTGACGAAGATTTCCCTGCT
LOC_Os03g41160
OsAffx.3470.1.S1_at--652--10491Chr03:22839849..22839873 (25 bp)
TTAAAGCAGCCAACGTCAGCATCTT
LOC_Os03g41160
OsAffx.3470.1.S1_at--197--6551Chr03:22839947..22839971 (25 bp)
GATTTTCGCTTGGAAGTTGGCGCAT
LOC_Os03g41160
OsAffx.3470.1.S1_at--2--10871Chr03:22839963..22839987 (25 bp)
TTGGCGCATGATAGACTGCCGACTT
LOC_Os03g41160
OsAffx.3470.1.S1_at--520--5511Chr03:22840014..22840038 (25 bp)
GAACAATCAGGCATATTTCCGATCT
LOC_Os03g41160
OsAffx.3470.1.S1_at--1094--10651Chr03:22840030..22840054 (25 bp)
TTCCGATCTGTGCTCAGACGGTGGA
LOC_Os03g41160
OsAffx.3470.1.S1_at--551--991Chr03:22840054..22840078 (25 bp)
AGGATGGCTTCCATGCAACGGTGGA
LOC_Os03g41160
OsAffx.3470.1.S1_at--76--2491Chr03:22840141..22840165 (25 bp)
AATGTTTCGCTAGAACGGGACCAGA
LOC_Os03g41160
OsAffx.3470.1.S1_at--518--7791Chr03:22840175..22840199 (25 bp)
GGTCCTACTGGATGCATCCGATGAT
LOC_Os03g41160
Target Sequence 
AAATTTGGCGCCACCGATGGATACCTAAGGGTGACAAGTCAGTGGAATGGAATGAAAGGCTTGTTCGGCATGTCATGAAG
GAAGAGGATGCTACTGAAACGCTGCGAATGAATCTGTCTGGTGCAATTGACGAAGATTTCCCTGCTTGGCAGCCGGAGCG
GACAGGAATGTTTACAGTTAAAAGTGCTTATAGATTGGCATGGAACTTAAAGCAGCCAACGTCAGCATCTTCTAGTTCAG
AAGCCGATGGGGAGAGGAAAATCTGGAGATGTCTTTGGAAAACAAATGTACAGCCTAAAGTTAAGATTTTCGCTTGGAAG
TTGGCGCATGATAGACTGCCGACTTGGGAGAATAAGAGGAAAAGGAAAATAGAACAATCAGGCATATTTCCGATCTGTGC
TCAGACGGTGGAGGATGGCTTCCATGCAACGGTGGAATGCACAAAAGCAAGAGCCCTGAGAGAAGGAATGCAGGAGATTT
GGAAGTTGCCGGGAGAAGAATGTTTCGCTAGAACGGGACCAGATTGGTTACTGGTCCTACTGGATGCATCCGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis