Browse Element(s) Details


OsAffx.3473.1.S1_x_at

Description tigr:9631.m03982
TID=OsAffx.3473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative serine protease inhibitor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4141911/11Serpin family protein, expressed
LOC_Os03g414381/11Protein Z, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41390Os.49588.1.S1_at11/113+22991100..22991972Zinc finger, C2H2 type family protein, expressed
LOC_Os03g41394OsAffx.22898.1.S1_at1/113+22995114..22995891NA
LOC_Os03g41400NANA3+23000000..23001550hypothetical protein
LOC_Os03g41419OsAffx.3473.1.S1_x_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41419Os.50445.1.S1_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41438Os.11903.1.S1_at11/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.28164.2.S1_at2/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.3473.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.10096.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438Os.52574.2.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41460Os.49745.1.S1_at11/113+23023354..23025747Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g41470OsAffx.13285.1.S1_at10/113+23026905..23029543hypothetical protein
LOC_Os03g41470OsAffx.24902.1.S1_s_at1/113+23026905..23029543hypothetical protein
LOC_Os03g41480OsAffx.13286.1.S1_at11/113+23032440..23034859hypothetical protein
LOC_Os03g41480Os.45173.1.S1_x_at3/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.11899.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.25327.1.S1_at1/113+23032440..23034859hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3473.1.S1_x_at--839--8371Chr03:23007396..23007420 (25 bp)
GGCGAGTCAGTTCAAGCACCATTCA
LOC_Os03g41419
OsAffx.3473.1.S1_x_at--667--5391Chr03:23007473..23007497 (25 bp)
GAAGCTTCCTTACCTGCAAGGTGGT
LOC_Os03g41419
OsAffx.3473.1.S1_x_at--957--6193Chr03:23007503..23007527 (25 bp)
GAGGCAGTTCTCCATGTACATACTC
LOC_Os03g41419
OsAffx.3473.1.S1_x_at--944--872Chr03:23007544..23007568 (25 bp)
ATGGCCTCTGGAGCTTGGCTGAGAA
LOC_Os03g41419
OsAffx.3473.1.S1_x_at--298--7251Chr03:23007613..23007637 (25 bp)
GTCCGGTCCATGTTGGGCAGTTCAA
LOC_Os03g41419
OsAffx.3473.1.S1_x_at--361--5011Chr03:23007629..23007653 (25 bp)
GCAGTTCAAGCTCCCTAAGTTCAAG
LOC_Os03g41419
OsAffx.3473.1.S1_x_at--153--2191Chr03:23007758..23007782 (25 bp)
ACAAAACCTGTTTGTCTCATCCGTT
LOC_Os03g41419
OsAffx.3473.1.S1_x_at--1140--9532Chr03:23007774..23007798 (25 bp)
TCATCCGTTTTCCACAAGTCGTTTA
LOC_Os03g41419
OsAffx.3473.1.S1_x_at--45--8551Chr03:23007850..23007874 (25 bp)
TGGAGCATTCAAGACCGAGGCGTTT
LOC_Os03g41419
OsAffx.3473.1.S1_x_at--153--6211Chr03:23007866..23007890 (25 bp)
GAGGCGTTTGAACTTCGTCGCAGAC
LOC_Os03g41419
OsAffx.3473.1.S1_x_at--250--2571Chr03:23007923..23007947 (25 bp)
AACTGGTGTGATCTTGTTCATCGGC
LOC_Os03g41419
Target Sequence 
GGCGAGTCAGTTCAAGCACCATTCATGTCCACTCGAAAGAAGCAATATCTTTCGTCTTATGACAGCTTGAAGGTACTGAA
GCTTCCTTACCTGCAAGGTGGTGACAAGAGGCAGTTCTCCATGTACATACTCCTTCCAGAAGCACAGGATGGCCTCTGGA
GCTTGGCTGAGAAGCTGAACTCTGAGCCAGAGTTCATGGAGAACCACATCCCAATGCGTCCGGTCCATGTTGGGCAGTTC
AAGCTCCCTAAGTTCAAGATTTCGTTTGGATTTGGAGCGTCTGGATTGCTGAAAGGTTTGGGGCTCCCCCTGCTGTTTGG
CTCAGAAGTTGATCTTATAGAGATGGTCGATTCACCAGGGGCACAAAACCTGTTTGTCTCATCCGTTTTCCACAAGTCGT
TTATCGAGGTGAATGAGGAAGGGACCGAGGCTACTGCTGCAGTGATGGTGTCCATGGAGCATTCAAGACCGAGGCGTTTG
AACTTCGTCGCAGACCATCCTTTCATGTTCCTGATCAGGGAAGACGTAACTGGTGTGATCTTGTTCATCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3473.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis