Browse Element(s) Details


OsAffx.3529.1.S1_at

Description tigr:9631.m04459
TID=OsAffx.3529.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4601010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45970Os.26902.1.S1_at11/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.943.1.S1_at2/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.20275.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45970Os.46805.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45980Os.53437.1.S1_at11/113+25946335..25949128expressed protein
LOC_Os03g45990Os.25461.1.S1_at8/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990Os.24884.1.A1_s_at3/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990OsAffx.26764.1.S1_x_at1/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g46010OsAffx.3529.1.S1_at10/113+25963128..25964241hypothetical protein
LOC_Os03g46030OsAffx.13375.1.S1_at11/113+25970129..25970551hypothetical protein
LOC_Os03g46040Os.49439.1.S1_at11/113+25972952..25977048expressed protein
LOC_Os03g46046NANA3+25981759..25982339hypothetical protein
LOC_Os03g46052NANA3+25983378..25983992hypothetical protein
LOC_Os03g46060Os.12761.1.S1_at11/113+25987087..25987939P21 protein, putative, expressed
LOC_Os03g46070Os.459.1.S1_at10/113+25988565..25989483P21 protein, putative, expressed
LOC_Os03g46070Os.6867.1.S1_x_at1/113+25988565..25989483P21 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3529.1.S1_at--276--5571Chr03:25963203..25963227 (25 bp)
GAAAGCACTCTGCTGTCGCGATCTC
LOC_Os03g46010
OsAffx.3529.1.S1_at--110--4051NONE
CGATCTCGCGAGGATAACAAGGACA
NONE
OsAffx.3529.1.S1_at--1093--9612Chr03:25963954..25963978 (25 bp)
TCATGGAGGAGTTCGCTGGGCACCA
LOC_Os03g46010
OsAffx.3529.1.S1_at--936--10631Chr03:25963965..25963989 (25 bp)
TTCGCTGGGCACCAATGGAGACACT
LOC_Os03g46010
OsAffx.3529.1.S1_at--442--2971Chr03:25963978..25964002 (25 bp)
AATGGAGACACTCCTCTCGATTCGG
LOC_Os03g46010
OsAffx.3529.1.S1_at--750--10711Chr03:25964023..25964047 (25 bp)
TTGCGGGCTCGCGACCACGATGGTC
LOC_Os03g46010
OsAffx.3529.1.S1_at--537--3351Chr03:25964038..25964062 (25 bp)
CACGATGGTCTAGCTCCTGGCAGCA
LOC_Os03g46010
OsAffx.3529.1.S1_at--199--4311Chr03:25964102..25964126 (25 bp)
CCTTCTTCGTGCTTCCGTGTGAAAA
LOC_Os03g46010
OsAffx.3529.1.S1_at--226--3991Chr03:25964109..25964133 (25 bp)
CGTGCTTCCGTGTGAAAAGTCATTT
LOC_Os03g46010
OsAffx.3529.1.S1_at--326--2851Chr03:25964125..25964149 (25 bp)
AAGTCATTTGCTGACCATGTGGGAA
LOC_Os03g46010
OsAffx.3529.1.S1_at--573--9291Chr03:25964175..25964199 (25 bp)
TCCCGACGGGATCCCAGTGGATAGA
LOC_Os03g46010
Target Sequence 
GAAAGCACTCTGCTGTCGCGATCTCGCGAGGATAACAAGGACAAGGAGCAGCAAGCACAAGGAGGAATAGGGGCAACCGT
CGGAAGGTGGAGGTCATGGAGGAGTTCGCTGGGCACCAATGGAGACACTCCTCTCGATTCGGCTGCTGGCGGTAGATGGG
GGTTGCGGGCTCGCGACCACGATGGTCTAGCTCCTGGCAGCAATGGACTGGGAGCGCGTGAGGCCAACAAGGCGTACGAC
GCCTTCTTCGTGCTTCCGTGTGAAAAGTCATTTGCTGACCATGTGGGAATGCGGGGATCCCGTCCCGTCCCGACTCCCGA
CGGGATCCCAGTGGATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis