Browse Element(s) Details


OsAffx.3535.1.S1_at

Description tigr:9631.m04546
TID=OsAffx.3535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4679011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46720OsAffx.25585.1.S1_at11/113+26389883..26391746F-box domain containing protein
LOC_Os03g46730Os.51760.1.S1_at11/113+26391945..26393507expressed protein
LOC_Os03g46730Os.51760.2.S1_at10/113+26391945..26393507expressed protein
LOC_Os03g46740Os.34369.1.S1_at11/113+26394467..26397972ABC transporter family protein, expressed
LOC_Os03g46750Os.16285.1.S1_a_at11/113+26398078..26400679mannosyltransferase family protein, putative, expressed
LOC_Os03g46760NANA3+26401404..26402936hypothetical protein
LOC_Os03g46770Os.46231.2.S1_x_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46231.1.S1_a_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46902.1.S1_x_at1/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46780OsAffx.25586.1.S1_at11/113+26411457..26413586hypothetical protein
LOC_Os03g46790OsAffx.3535.1.S1_at11/113+26415393..26416399Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g46800NANA3+26420988..26423339retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46810NANA3+26423976..26425551retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46820NANA3+26425664..26426578hypothetical protein
LOC_Os03g46830Os.35344.18.S1_x_at11/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830Os.35344.3.S1_x_at9/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830OsAffx.22940.5.S1_x_at3/113+26437243..26443290transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3535.1.S1_at--510--8011Chr03:26415618..26415642 (25 bp)
GGAGGCTGGTCAAGGTCCCCGAATC
LOC_Os03g46790
OsAffx.3535.1.S1_at--254--4251Chr03:26415657..26415681 (25 bp)
CCGTCTGGTGGATGCGGCAGCAATA
LOC_Os03g46790
OsAffx.3535.1.S1_at--46--3091Chr03:26415678..26415702 (25 bp)
AATAATCTGCCCCTGATGAGCTGGG
LOC_Os03g46790
OsAffx.3535.1.S1_at--35--7991Chr03:26415801..26415825 (25 bp)
GGATCCACCACCAGGAAGACCTCGG
LOC_Os03g46790
OsAffx.3535.1.S1_at--190--7111Chr03:26416124..26416148 (25 bp)
GTCACCGAGGCAGCAATGGCGACAC
LOC_Os03g46790
OsAffx.3535.1.S1_at--451--6131Chr03:26416159..26416183 (25 bp)
GAGGGCGATGAACCACCTTCCAGTT
LOC_Os03g46790
OsAffx.3535.1.S1_at--45--4171Chr03:26416209..26416233 (25 bp)
CGCCGACGAACAACGTTGTGATGGT
LOC_Os03g46790
OsAffx.3535.1.S1_at--74--8891Chr03:26416233..26416257 (25 bp)
TGAGGATCCATTGCGAGAACGGCGA
LOC_Os03g46790
OsAffx.3535.1.S1_at--849--1031Chr03:26416284..26416308 (25 bp)
AGGTCGAGGAGATCCACCTCAGAAT
LOC_Os03g46790
OsAffx.3535.1.S1_at--587--2611Chr03:26416313..26416337 (25 bp)
AACGCCAATGTCATGCCATTTCTGG
LOC_Os03g46790
OsAffx.3535.1.S1_at--954--191Chr03:26416330..26416354 (25 bp)
ATTTCTGGATCAGGGCGCCACGATG
LOC_Os03g46790
Target Sequence 
GGAGGCTGGTCAAGGTCCCCGAATCCGGGGGCCAGGCCGCCGTCTGGTGGATGCGGCAGCAATAATCTGCCCCTGATGAG
CTGGGACTTCAGCGCCGCCTCGGTGGCGGTGCAGGTGCAGCCGAACGGCGGCGGCGGTGGCGGCGCGCCGGAGATGGCGT
ACGGGTCACCGCCGGCGGCCGGGGGATCCACCACCAGGAAGACCTCGGCGCCCACGATGGACAAGGCGACGATCCTCTCC
GACGCGGCGAGCTACATCAGGGAGCTGCAAGAGAAGCTCAAGGCGCTAGAGGAGCAGGCTGCTGCCAGGGTCACCGAGGC
AGCAATGGCGACACCGTCGCCGGCGAGGGCGATGAACCACCTTCCAGTTCCGCCGGAGATCGAGGTGCGGTGCTCGCCGA
CGAACAACGTTGTGATGGTGAGGATCCATTGCGAGAACGGCGAGGGGGTGATCGTGAGGATCCTCGCCGAGGTCGAGGAG
ATCCACCTCAGAATCATCAACGCCAATGTCATGCCATTTCTGGATCAGGGCGCCACGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis