Browse Element(s) Details


OsAffx.3553.2.A1_at

Description tigr:9631.m04722
TID=OsAffx.3553.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4852011/11PB1 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48480Os.21138.1.S1_at10/113+27593817..27596684thioesterase family protein, putative, expressed
LOC_Os03g48490OsAffx.3553.1.S1_x_at11/113+27601413..27608908bHLH family protein, putative, expressed
LOC_Os03g48504NANA3+27609659..27609847NA
LOC_Os03g48520OsAffx.3553.2.A1_at11/113+27611598..27612350PB1 domain containing protein
LOC_Os03g48529NANA3+27612932..27613077NA
LOC_Os03g48540Os.17998.1.S1_at10/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48540Os.5235.1.S1_x_at3/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48550OsAffx.30226.3.S1_at11/113+27623825..27624707hypothetical protein
LOC_Os03g48560OsAffx.13408.1.S1_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560OsAffx.13408.1.S1_x_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560Os.46676.1.A1_x_at1/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3553.2.A1_at--770--5832Chr08:8630229..8630252 (24 bp)
GACCTGCTGGTGTCGGTCACCTCCG
NONE
OsAffx.3553.2.A1_at--1127--9112Chr08:8630233..8630516 (25 bp)
TGCTGGTGTCGGTCACCTCCGACGA
NONE
OsAffx.3553.2.A1_at--443--974Chr04:27144579..27144603 (25 bp)
AGGAGCTCGCCCACATGCGCGACGA
NONE
OsAffx.3553.2.A1_at--11--4012Chr03:27612037..27612061 (25 bp)
CGTCCGCGAGCTTCCGGGTGTTCGT
LOC_Os03g48520
OsAffx.3553.2.A1_at--20--3371Chr03:27612009..27612033 (25 bp)
CACCGCCGCTGGTGTCCAGCAGCAG
LOC_Os03g48520
OsAffx.3553.2.A1_at--1086--8372Chr03:27611860..27611884 (25 bp)
GGCGAGTGCACAGCGCGCAGGAGCT
LOC_Os03g48520
OsAffx.3553.2.A1_at--242--8451Chr03:27611822..27611846 (25 bp)
GGCCACTCGCGCCAGTGCTTCGACG
LOC_Os03g48520
OsAffx.3553.2.A1_at--905--772Chr03:27611693..27611717 (25 bp)
ATGTCCAAGAACGTCAATGGCGCGC
LOC_Os03g48520
OsAffx.3553.2.A1_at--179--2131Chr03:27611667..27611691 (25 bp)
ACAGGCGGCTCCTGCGGTGTCAGCG
LOC_Os03g48520
OsAffx.3553.2.A1_at--676--4091Chr03:27611632..27611656 (25 bp)
CGACAGGTCCGGTGGTCTTCGAGTT
LOC_Os03g48520
OsAffx.3553.2.A1_at--102--3471Chr03:27611629..27611653 (25 bp)
CAGGTCCGGTGGTCTTCGAGTTGGA
LOC_Os03g48520
Target Sequence 
GACCTGCTGGTGTCGGTCACCTCCGACGAGGAGCTCGCCCACATGCGCGACGAGTACGACCGCCTCAGGGCGACGCGGCC
GTCCGCGAGCTTCCGGGTGTTCGTCTCCACCGCCGCTGGTGTCCAGCAGCAGCGGCGCCAGCCCGTCGCGCCCCCGATGA
TGATGCGGCGCGCGCGGAGCGCGCAGGAGCTCGCCGGGCGCCTGGCGCGCCGGCCTTGCCCGCCGGCCGGGCGGAGCGCC
GCTGCGCCGTCCGTGCGGCGAGTGCACAGCGCGCAGGAGCTCGCCGCCGGGGGCGGCCACTCGCGCCAGTGCTTCGACGA
CCGCCGCCGCCTCCAGAGCTGCTGCTGGTGCTGCCACCGCCGCCGCGACCAGTGCGCGGCTGTGCCACAGCCGGCGAGGC
CGGTGCGCCAGCTGCCGGCCGCCATGTCCAAGAACGTCAATGGCGCGCGACAGGCGGCTCCTGCGGTGTCAGCGGCGGCG
AAGGCGACAGGTCCGGTGGTCTTCGAGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3553.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis