Browse Element(s) Details


OsAffx.3582.1.S1_x_at

Description tigr:9631.m05114
TID=OsAffx.3582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5229011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52239OsAffx.25688.1.S1_at11/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.3581.1.S1_at10/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.17864.1.S1_x_at1/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52258OsAffx.13466.1.S1_at10/113+29964436..29964755hypothetical protein
LOC_Os03g52280NANA3+29973887..29975263hypothetical protein
LOC_Os03g52284NANA3+29977524..29979158expressed protein
LOC_Os03g52290OsAffx.3582.1.S1_x_at11/113+29983078..29983773hypothetical protein
LOC_Os03g52300Os.9956.1.S1_at11/113+29984664..29987427expressed protein
LOC_Os03g52300OsAffx.6133.1.S1_at9/113+29984664..29987427expressed protein
LOC_Os03g52310Os.7726.1.S1_at10/113+29989628..29993399hAT family dimerisation domain containing protein, expressed
LOC_Os03g52320Os.50790.1.S1_at11/113+29995741..29999342SSXT protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3582.1.S1_x_at--727--5931Chr03:29983647..29983671 (25 bp)
GAGCAGGTGCGGTGCCTCGTCGCCT
LOC_Os03g52290
OsAffx.3582.1.S1_x_at--44--4491Chr03:29983468..29983492 (25 bp)
GCCGGACGAGAACCACCAGGCGATC
LOC_Os03g52290
OsAffx.3582.1.S1_x_at--712--1851Chr03:29983463..29983487 (25 bp)
ACGAGAACCACCAGGCGATCCTCGT
LOC_Os03g52290
OsAffx.3582.1.S1_x_at--56--4811Chr03:29983381..29983405 (25 bp)
GCTCGAGTGCCAGAGGCAATGGAAC
LOC_Os03g52290
OsAffx.3582.1.S1_x_at--746--4351Chr03:29983372..29983396 (25 bp)
CCAGAGGCAATGGAACAACGGCGGC
LOC_Os03g52290
OsAffx.3582.1.S1_x_at--184--9851Chr03:29983182..29983206 (25 bp)
TACATGCGCGGGAGGTTCGAGAGGA
LOC_Os03g52290
OsAffx.3582.1.S1_x_at--974--9391Chr03:29983149..29983173 (25 bp)
TCGTCGGATGCGGAGTCGTTCCACC
LOC_Os03g52290
OsAffx.3582.1.S1_x_at--1099--7971Chr03:29983144..29983168 (25 bp)
GGATGCGGAGTCGTTCCACCTCGTT
LOC_Os03g52290
OsAffx.3582.1.S1_x_at--858--9131Chr03:29983141..29983165 (25 bp)
TGCGGAGTCGTTCCACCTCGTTGAC
LOC_Os03g52290
OsAffx.3582.1.S1_x_at--727--9391Chr03:29983124..29983148 (25 bp)
TCGTTGACCCCATCGGATGGCTGGG
LOC_Os03g52290
OsAffx.3582.1.S1_x_at--86--871Chr03:29983108..29983132 (25 bp)
ATGGCTGGGATTCAACGGCAACGAC
LOC_Os03g52290
Target Sequence 
GAGCAGGTGCGGTGCCTCGTCGCCTCCACGCTCCTGCCGTGCGACGCCGACGTCCTCGGCCTCTCCTCCTCCCGCCGCCC
GCCGCCGCCCACCGTAGTCCGCGGCACGCTCTTCCTCCCCTCCACCGGCGGCGACCGCCGCGTCCGCCTCTTCCTGCACG
AGCACGACCCCTCGCCCTCGCCGGACGAGAACCACCAGGCGATCCTCGTCCTCGACCTGCCACCCGGCCTCTCCGGCGCC
GACATCGCCGCCGCGGGGAGGGTAGTGCTCGAGTGCCAGAGGCAATGGAACAACGGCGGCGGCGCGCTCCTCGAGTCGGC
CAAGTGGCTGGTGTACTGCAACGGGCGGCGCGTGGGGTTCGCGGCGAGGCGGGGGGAGGCGTCGGACGCGGAGGGGTGGG
TGCTGGAGAAGCTGTGGGCCGTCACCGCCGGCGCCGGCCGGCTGCCCGGCGGCGCCGGGGTGGAGTACATGCGCGGGAGG
TTCGAGAGGACCGTGGCGTCGTCGGATGCGGAGTCGTTCCACCTCGTTGACCCCATCGGATGGCTGGGATTCAACGGCAA
CGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3582.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis