Browse Element(s) Details


OsAffx.3615.1.S1_s_at

Description tigr:9631.m05416
TID=OsAffx.3615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative acetyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5553011/11N-acetyltransferase, putative, expressed
LOC_Os07g025401/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55510NANA3+31530612..31530845hypothetical protein
LOC_Os03g55530OsAffx.3615.1.S1_s_at11/113+31536788..31538748N-acetyltransferase, putative, expressed
LOC_Os03g55540Os.7912.1.S1_at11/113+31543898..31545156Zinc-finger protein 1, putative, expressed
LOC_Os03g55550OsAffx.13494.1.S1_at11/113+31547516..31550447Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55560Os.39067.1.A1_s_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.37832.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.54700.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55570Os.50269.1.S1_at11/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55570OsAffx.3616.1.S1_at9/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009640biological_processphotomorphogenesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3615.1.S1_s_at--1072--8092Chr03:31538229..31538253 (25 bp)
GGACCTCTGGTGCATCAAGCGTCTC
LOC_Os03g55530
OsAffx.3615.1.S1_s_at--123--10631Chr03:31538317..31538341 (25 bp)
TTCGTCGACCCAAGAGAGTTTTAGG
LOC_Os03g55530
OsAffx.3615.1.S1_s_at--48--5751Chr03:31538416..31538440 (25 bp)
GACGGCGGGCAGTCGCTCCCTAGAA
LOC_Os03g55530
OsAffx.3615.1.S1_s_at--202--2411Chr03:31538457..31538481 (25 bp)
AAACATGTGTCACTCTTCATCTCGT
LOC_Os03g55530
OsAffx.3615.1.S1_s_at--723--9551Chr03:31538470..31538494 (25 bp)
TCTTCATCTCGTCGTATTTCCCGTT
LOC_Os03g55530
OsAffx.3615.1.S1_s_at--584--9691Chr03:31538539..31538563 (25 bp)
TAATAGTAGTACCTTTTTCCCAGCT
LOC_Os03g55530
OsAffx.3615.1.S1_s_at--202--4771Chr03:31538584..31538608 (25 bp)
GCTGCTTAACTGTAACTCGTTTGCT
LOC_Os03g55530
OsAffx.3615.1.S1_s_at--817--9891Chr03:31538614..31538638 (25 bp)
TACTTTTGCCTCATTGCCGTTTACA
LOC_Os03g55530
OsAffx.3615.1.S1_s_at--357--3891Chr03:31538644..31538668 (25 bp)
CTGTGCGCACAGTACTTGCATGTGT
LOC_Os03g55530
OsAffx.3615.1.S1_s_at--340--2071Chr03:31538657..31538681 (25 bp)
ACTTGCATGTGTATCGAAAGGCATC
LOC_Os03g55530
OsAffx.3615.1.S1_s_at--939--8271Chr03:31538676..31538700 (25 bp)
GGCATCGACATGGAATAGACCTGAA
LOC_Os03g55530
Target Sequence 
GGACCTCTGGTGCATCAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCGCCGGGCC
GCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTCCCTAGGCCTTTAGGGTTTTTTCCC
GACCGTCCGATCTCCTCCCGCACATCCGACGGCGGGCAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCA
CTCTTCATCTCGTCGTATTTCCCGTTCCATCACCATCACTTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGTAGT
ACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACTCGTTTGCTACGCGTACTTTTGCCTCATT
GCCGTTTACAACATCCTGTGCGCACAGTACTTGCATGTGTATCGAAAGGCATCGACATGGAATAGACCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3615.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis