Browse Element(s) Details


OsAffx.3648.1.S1_x_at

Description tigr:9631.m05894
TID=OsAffx.3648.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative calcium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5987011/11EF hand family protein
LOC_Os03g5979011/11EF hand family protein
LOC_Os03g597701/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59810OsAffx.20329.1.S1_at2/113+33995491..33999903retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59820NANA3+34000254..34001240hypothetical protein
LOC_Os03g59830OsAffx.13554.1.S1_at11/113+34008049..34008483hypothetical protein
LOC_Os03g59840OsAffx.25775.1.S1_at11/113+34009356..34012621hypothetical protein
LOC_Os03g59840Os.29893.1.S1_at1/113+34009356..34012621hypothetical protein
LOC_Os03g59850OsAffx.3647.1.S1_at10/113+34013330..34014930hypothetical protein
LOC_Os03g59860Os.33670.3.S1_s_at11/113+34016196..34018133hypothetical protein
LOC_Os03g59860OsAffx.25776.1.S1_at11/113+34016196..34018133hypothetical protein
LOC_Os03g59860Os.33670.1.S1_at4/113+34016196..34018133hypothetical protein
LOC_Os03g59860Os.33670.3.S1_x_at2/113+34016196..34018133hypothetical protein
LOC_Os03g59870OsAffx.3648.1.S1_x_at11/113+34020617..34021240EF hand family protein
LOC_Os03g59874NANA3+34024640..34025166hypothetical protein
LOC_Os03g59880OsAffx.25777.1.S1_at11/113+34027920..34028721expressed protein
LOC_Os03g59894Os.38395.4.S1_x_at3/113+34032264..34035601Transposable element protein, putative, MuDR
LOC_Os03g59910NANA3+34037206..34037611hypothetical protein
LOC_Os03g59920Os.45173.1.S1_x_at2/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59920Os.10731.2.A1_at1/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59920Os.38764.1.S1_x_at1/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59930NANA3+34044331..34044789hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3648.1.S1_x_at--1035--7452Chr03:34020650..34020674 (25 bp)
GTGTCGTCTCTCCTGATCATTAGCA
LOC_Os03g59870
OsAffx.3648.1.S1_x_at--721--6432Chr03:34020664..34020688 (25 bp)
GATCATTAGCAGAGGCGTGCGCGCC
LOC_Os03g59870
OsAffx.3648.1.S1_x_at--354--432Chr03:34020665..34020689 (25 bp)
ATCATTAGCAGAGGCGTGCGCGCCG
LOC_Os03g59870
OsAffx.3648.1.S1_x_at--313--4572Chr03:34020682..34020706 (25 bp)
GCGCGCCGTGTCTCGCGCGCTCGTT
LOC_Os03g59870
OsAffx.3648.1.S1_x_at--429--5792Chr03:34020746..34020770 (25 bp)
GACGACTATCGCTACTGCGCGGCCG
LOC_Os03g59870
OsAffx.3648.1.S1_x_at--438--1672Chr03:34020795..34020819 (25 bp)
AGCCTCCGCGGCTGCGTTGTTGCGA
LOC_Os03g59870
OsAffx.3648.1.S1_x_at--837--3932Chr03:34020803..34020827 (25 bp)
CGGCTGCGTTGTTGCGAGCGGTGCG
LOC_Os03g59870
OsAffx.3648.1.S1_x_at--489--4692Chr03:34021091..34021115 (25 bp)
GCGGAGCTGCGGAGCGTGCTGCGGA
LOC_Os03g59870
OsAffx.3648.1.S1_x_at--62--1612Chr03:34021095..34021119 (25 bp)
AGCTGCGGAGCGTGCTGCGGAGGCT
LOC_Os03g59870
OsAffx.3648.1.S1_x_at--663--3832Chr03:34021097..34021121 (25 bp)
CTGCGGAGCGTGCTGCGGAGGCTGG
LOC_Os03g59870
OsAffx.3648.1.S1_x_at--1044--3333Chr03:34021142..34021166 (25 bp)
CACGGCGACTGCGTCAGGATGATCG
LOC_Os03g59870
Target Sequence 
GTGTCGTCTCTCCTGATCATTAGCAGAGGCGTGCGCGCCGTGTCTCGCGCGCTCGTTCGCCTCGCGCTCCTCCTCGTGCA
CGTCGTCGACGAGGANGACGACTATCGCTACTGCGCGGCCGNTGCTGNNGNCGACGNCGTCGTCCAGCCTCCGCGGCTGC
GTTGTTGCGAGCGGTGCGCTGNNNNNNNNNNNNNCGGCGNNNNNNNNNNNNNNNNNNCCGNGGCNNNNNTGTCNCGCCAC
GACGTCNCGGCGGTCGTGGCGAGCCTCGGCCTGGTCGCCGCCGACGAGGATGATGAGGAAGGCGATCATCAGGNGCCGTG
CGGCGCGTGCGAGGNGGTGGCNNNNNNNNAGANGCTGGCGGAGAGCAAGNTGGCCGGGGANGGCGAGCTGCGGNNNNNNN
GAGGCGTTCCGCGNNTGTTCGACCGCGACGGGGACGGGTACGTGAGCGCGGCGGAGCTGCGGAGCGTGCTGCGGAGGCTG
GGCATGGAGGAGGGCGCGCGGCACGGCGACTGCGTCAGGATGATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3648.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis