Browse Element(s) Details


OsAffx.3656.1.S1_x_at

Description tigr:9631.m05951
TID=OsAffx.3656.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g604404/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60380Os.24712.1.A1_s_at11/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60380OsAffx.25781.1.S1_at4/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60390Os.9436.1.S1_at11/113+34282081..34285669PHD finger protein, putative, expressed
LOC_Os03g60400Os.9075.1.S1_at11/113+34286112..3428834940S ribosomal protein S23, putative, expressed
LOC_Os03g60410OsAffx.13560.1.S1_at11/113+34289399..34289860hypothetical protein
LOC_Os03g60430OsAffx.13602.1.S1_at11/113+34297474..34301012Floral homeotic protein APETALA2, putative, expressed
LOC_Os03g60440OsAffx.3656.1.S1_at5/113+34305773..34306171hypothetical protein
LOC_Os03g60440OsAffx.3656.1.S1_x_at4/113+34305773..34306171hypothetical protein
LOC_Os03g60449NANA3+34310640..34311682hypothetical protein
LOC_Os03g60460Os.15432.1.S1_at10/113+34317091..34321293Peptidase family M1 containing protein, expressed
LOC_Os03g60470Os.53476.1.S1_at11/113+34321693..34323295expressed protein
LOC_Os03g60480Os.8144.1.S1_at11/113+34324835..34327108heavy metal-associated domain containing protein, expressed
LOC_Os03g60500OsAffx.28855.3.S1_x_at5/113+34330365..34332169hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3656.1.S1_x_at--1005--6371Chr03:34303449..34303473 (25 bp)
GATCCCCTGCCTTGCCGCTGGATGG
NONE
OsAffx.3656.1.S1_x_at--300--3631Chr03:34303459..34303806 (25 bp)
CTTGCCGCTGGATGGGTGTGAACCC
NONE
OsAffx.3656.1.S1_x_at--1160--8551NONE
TGGATGGGTGTGAACCCTCTCAGGT
NONE
OsAffx.3656.1.S1_x_at--1149--7452Chr12:5936622..5936642 (21 bp)
GTGTGAACCCTCTCAGGTGATGGCG
NONE
OsAffx.3656.1.S1_x_at--1105--8972Chr12:5936622..5936645 (24 bp)
TGAACCCTCTCAGGTGATGGCGTCT
NONE
OsAffx.3656.1.S1_x_at--502--3772Chr12:5936627..5936650 (24 bp)
CTCTCAGGTGATGGCGTCTCAAGCA
NONE
OsAffx.3656.1.S1_x_at--154--6232Chr03:34305772..34305796 (25 bp)
GATGGCGTCTCAAGCATTTCCGTCG
NONE
OsAffx.3656.1.S1_x_at--1159--9191Chr03:34305811..34305835 (25 bp)
TGCCAACGTGGGTGCCGGCGCTCAC
LOC_Os03g60440
OsAffx.3656.1.S1_x_at--997--1791Chr03:34305868..34305892 (25 bp)
ACCGCTCGAGCGCATGGTAGTCCTC
LOC_Os03g60440
OsAffx.3656.1.S1_x_at--8--3771Chr03:34305921..34305945 (25 bp)
CTCTTCCATCCGTCATCAGGGAGAA
LOC_Os03g60440
OsAffx.3656.1.S1_x_at--1049--7192Chr03:34305967..34305991 (25 bp)
GTCGTCGCTGTTTGACGCCGCCCGG
LOC_Os03g60440
Target Sequence 
GATCCCCTGCCTTGCCGCTGGATGGGTGTGAACCCTCTCAGGTGATGGCGTCTCAAGCATTTCCGTCGTGCTGCCCCGTT
GCTGCCAACGTGGGTGCCGGCGCTCACCGCATCCCGCCGCCGGAACTGCTGCACCGGCCACCGCTCGAGCGCATGGTAGT
CCTCGCTGGCGACGAGCACCACCCCACGCTTCCTCTTCCATCCGTCATCAGGGAGAAGGTGAAGAACAGCGGCGCGCGGT
CGTCGCTGTTTGACGCCGCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3656.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis