Browse Element(s) Details


OsAffx.3666.1.S1_at

Description tigr:9631.m06071
TID=OsAffx.3666.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6155011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61500Os.34496.1.S1_at11/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.2.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.1.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61510Os.38864.1.S1_at8/113+34830157..34830983pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61530Os.5700.1.S1_at9/113+34834281..34835059pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61540Os.16897.1.S1_at11/113+34835273..34839862Lipase family protein, expressed
LOC_Os03g61550OsAffx.3666.1.S1_at11/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61550Os.54537.1.S1_at1/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein
LOC_Os03g61570Os.16297.1.S1_a_at11/113+34852338..34853780expressed protein
LOC_Os03g61580Os.26697.2.S1_x_at11/113+34857548..34861623expressed protein
LOC_Os03g61580Os.26697.1.S1_at10/113+34857548..34861623expressed protein
LOC_Os03g61580OsAffx.30311.1.S1_at1/113+34857548..34861623expressed protein
LOC_Os03g61590Os.34488.1.S1_at11/113+34862228..34862751expressed protein
LOC_Os03g61600Os.13812.1.S1_a_at11/113+34862852..34865607Phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor, putative, expressed
LOC_Os03g61610OsAffx.22651.2.S1_x_at10/113+34866275..34867556hypothetical protein
LOC_Os03g61610OsAffx.22651.2.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61610Os.51329.1.S1_at9/113+34866275..34867556hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3666.1.S1_at--130--4771Chr03:34844076..34844100 (25 bp)
GCTGCAGCTTCACCCGGACAAGAAC
LOC_Os03g61550
OsAffx.3666.1.S1_at--314--3951Chr03:34844090..34844114 (25 bp)
CGGACAAGAACACGCACGCAAAGGC
LOC_Os03g61550
OsAffx.3666.1.S1_at--1152--1831Chr03:34844105..34844129 (25 bp)
ACGCAAAGGCGGAGGTCGCATTCAA
LOC_Os03g61550
OsAffx.3666.1.S1_at--1088--6211Chr03:34844500..34844523 (24 bp)
GAGGCGCACGCGTGCCTCACTGACG
LOC_Os03g61550
OsAffx.3666.1.S1_at--477--1852Chr08:20064165..20064245 (25 bp)
ACGACAGGTTCAGGCACCGCGCGGA
NONE
OsAffx.3666.1.S1_at--956--1871Chr03:34844737..34844761 (25 bp)
ACGAGTGCCGCGTCATCGACAGCTG
LOC_Os03g61550
OsAffx.3666.1.S1_at--438--7131Chr03:34844748..34844772 (25 bp)
GTCATCGACAGCTGCCTCAAGGCCA
LOC_Os03g61550
OsAffx.3666.1.S1_at--322--9331Chr03:34844881..34844905 (25 bp)
TCGCCGCGGAGTTCTGCCGGTTCGA
LOC_Os03g61550
OsAffx.3666.1.S1_at--481--4531Chr03:34844916..34844940 (25 bp)
GCCGCCGATCGGAACCAGAGATGGT
LOC_Os03g61550
OsAffx.3666.1.S1_at--1053--4591Chr03:34844956..34844980 (25 bp)
GCGAGTCGCCGGTGTATCAGATCAG
LOC_Os03g61550
OsAffx.3666.1.S1_at--993--6891Chr03:34844969..34844993 (25 bp)
GTATCAGATCAGAACCGCGCCGGAG
LOC_Os03g61550
Target Sequence 
GCTGCAGCTTCACCCGGACAAGAACACGCACGCAAAGGCGGAGGTCGCATTCAAGATCGTCTCCGAGGCGCACGCGTGCC
TCACTGACGGGGCTCGCCGGCGAGCCTTCGACGACGAGCGGGCGGCGAGCTACTGCGCCGCGTGCCACGACAGGTTCAGG
CACCGCGCGGAGAGGAGGACGCCGGCGGCGGCGACGGCCACCGGCGGCGCGCAGCACGGGAAGCACCGCGGCGGCGGCGG
CGGGGGGAGGAGGATGCCCGTCGCGGCGCAGGCGCTGCGGGAGGTGCAGAACCGGCTCCGGGACGAGTGCCGCGTCATCG
ACAGCTGCCTCAAGGCCAACGGCGGCGGTGGCGCGCGGCGGCGGCAGTCGTTCCCGCTCTTCGACCCCTCCGACCGGCTG
CGGTTCCCCGGCTACCCGCACACCCGCCCGCCCCCGCCGCCGCCGTTCGCCGCGGAGTTCTGCCGGTTCGAGGAGAACCT
CGCCGCCGATCGGAACCAGAGATGGTGCGGCAGCGGCGCCGGCGAGTCGCCGGTGTATCAGATCAGAACCGCGCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis