Browse Element(s) Details


OsAffx.3676.1.S1_at

Description tigr:9631.m06175
TID=OsAffx.3676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6251611/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62460OsAffx.25936.7.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.1.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.2.S1_x_at4/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.5.S1_x_at1/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62470OsAffx.25789.1.S1_at1/113+35316963..35317358No apical meristem protein
LOC_Os03g62480Os.23021.1.S1_at1/113+35319484..35320914UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g62490Os.10849.1.S1_at11/113+35321679..35324125Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os03g62500Os.18526.1.S1_at11/113+35324819..35330993Shaggy-related protein kinase kappa, putative, expressed
LOC_Os03g62510Os.22483.1.A1_s_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62510Os.22483.1.A1_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62516OsAffx.3676.1.S1_at11/113+35340066..35341620hypothetical protein
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3676.1.S1_at--381--6671Chr03:35340241..35340265 (25 bp)
GTTGCTCTAGTCAGTACCCATCACA
LOC_Os03g62516
OsAffx.3676.1.S1_at--164--391Chr03:35340260..35340283 (24 bp)
ATCACAGTTGGAATGCTCCTCCAGG
LOC_Os03g62516
OsAffx.3676.1.S1_at--955--4451Chr03:35340851..35340875 (25 bp)
GCCTCTTGTTGATTTGGACGGGAAT
LOC_Os03g62516
OsAffx.3676.1.S1_at--4--10091Chr03:35340907..35340931 (25 bp)
TAGGAACCCCTTACTTGCGATGGCA
LOC_Os03g62516
OsAffx.3676.1.S1_at--366--8271Chr03:35340928..35341117 (25 bp)
GGCATGTGATTACAGCTCTGCTGAA
LOC_Os03g62516
OsAffx.3676.1.S1_at--298--8951Chr03:35341114..35341138 (25 bp)
TGAAGTTGACTTCGGTAGTTACCCT
LOC_Os03g62516
OsAffx.3676.1.S1_at--154--8031Chr03:35341249..35341273 (25 bp)
GGAGTATATCTACCTGGCTGGAATG
LOC_Os03g62516
OsAffx.3676.1.S1_at--1149--6431Chr03:35341306..35341330 (25 bp)
GATCAGACTGCATGTACTTCAAAAT
LOC_Os03g62516
OsAffx.3676.1.S1_at--686--3271Chr03:35341325..35341349 (25 bp)
CAAAATATTGTTTCGTGCTTCCCCA
LOC_Os03g62516
OsAffx.3676.1.S1_at--469--8811Chr03:35341359..35341383 (25 bp)
TGTTGCGCCTGACTGGACAATCGAA
LOC_Os03g62516
OsAffx.3676.1.S1_at--522--4211Chr03:35341559..35341583 (25 bp)
CCCCACGTGGCTTTGAGGACATGTA
LOC_Os03g62516
Target Sequence 
GTTGCTCTAGTCAGTACCCATCACAGTTGGAATGCTCCTCCAGGTGGGATTGGAGGGCCTCTTGTTGATTTGGACGGGAA
TGTTTTGGGCATGAACTTCTATGATAAGAAGATAGGAACCCCTTACTTGCGATGGCATGTGATTACAGCTCTGCTGAAGT
TGACTTCGGTAGTTACCCTAGAGGGGCCACTCCCATGCTACGCAGGAGTATATCTACCTGGCTGGAATGGAGGTGACAAT
GCCAACCTAAACAGGGTTTTTGATCAGACTGCATGTACTTCAAAATATTGTTTCGTGCTTCCCCAATCTCCACCTGTTGC
GCCTGACTGGACAATCGAAACAGGTAACAGTGTCACGCTAAACAGGTGGCCCGTGCCCCTGCCATATTGGCGTCAACCTG
ACGATATGGAGGAGGAAGAACCCCCACGTGGCTTTGAGGACATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis