Browse Element(s) Details


OsAffx.3748.1.S1_at

Description tigr:9632.m00766
TID=OsAffx.3748.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0850011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08470OsAffx.25928.1.S1_at10/114+4551546..4558566F-box domain containing protein
LOC_Os04g08470Os.5139.2.S1_x_at1/114+4551546..4558566F-box domain containing protein
LOC_Os04g08470Os.5139.2.S1_at1/114+4551546..4558566F-box domain containing protein
LOC_Os04g08480Os.26886.6.S1_s_at10/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480Os.26886.2.S1_s_at9/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480OsAffx.16467.1.S1_at3/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480OsAffx.22240.1.S1_x_at1/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08490Os.26886.1.S1_x_at5/114+4570653..4574004transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08490Os.26886.3.S1_x_at5/114+4570653..4574004transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08500OsAffx.3748.1.S1_at11/114+4578450..4579526hypothetical protein
LOC_Os04g08510OsAffx.13728.1.S1_at11/114+4585130..4586326F-box domain containing protein, expressed
LOC_Os04g08520NANA4+4595395..4598375retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3748.1.S1_at--899--4391Chr04:4578685..4578709 (25 bp)
GCCAACGCAGCTACCTGGACATGAA
LOC_Os04g08500
OsAffx.3748.1.S1_at--455--10051Chr04:4578724..4578748 (25 bp)
TAGTTAGCACCATCTTGCGGGTCAG
LOC_Os04g08500
OsAffx.3748.1.S1_at--228--10691Chr04:4578738..4579037 (25 bp)
TTGCGGGTCAGCTCACTCAAAGAGA
LOC_Os04g08500
OsAffx.3748.1.S1_at--167--1671Chr04:4579088..4579112 (25 bp)
AGCCCATTGCTGTTGGTGCTTCCAT
LOC_Os04g08500
OsAffx.3748.1.S1_at--410--5291Chr04:4579147..4579171 (25 bp)
GAATGGCGAGCGATATCTCTTCAAT
LOC_Os04g08500
OsAffx.3748.1.S1_at--395--811Chr04:4579170..4579194 (25 bp)
ATGGGTGCCATTTTGCATGTGACCA
LOC_Os04g08500
OsAffx.3748.1.S1_at--1125--1891Chr04:4579281..4579305 (25 bp)
ACGTCATTCTTTGTGTCCAACATTT
LOC_Os04g08500
OsAffx.3748.1.S1_at--240--10131Chr04:4579309..4579333 (25 bp)
TATCCAATTGGAACCGCGTCTACTT
LOC_Os04g08500
OsAffx.3748.1.S1_at--1134--1791Chr04:4579321..4579345 (25 bp)
ACCGCGTCTACTTATATGAGCCCAT
LOC_Os04g08500
OsAffx.3748.1.S1_at--526--691Chr04:4579336..4579360 (25 bp)
ATGAGCCCATGTTGTGTCACCAAGA
LOC_Os04g08500
OsAffx.3748.1.S1_at--499--5371Chr04:4579365..4579389 (25 bp)
GAAGACACTAACGACCGTCATCTAC
LOC_Os04g08500
Target Sequence 
GCCAACGCAGCTACCTGGACATGAACAACAAGATGCACCTAGTTAGCACCATCTTGCGGGTCAGCTCACTCAAAGAGATC
TCCATCTTCAGTGGCAGTAACAGTGATGGTGTTGCTCCTCTCACGGCGAGCCCATTGCTGTTGGTGCTTCCATTTGCACA
CATCTACCAACATAGCTACCTGGATATGAATGGCGAGCGATATCTCTTCAATGGGTGCCATTTTGCATGTGACCAGCTGG
ACAAGAATTCATGGTGCTCCAAGGTGGAAGATGTCGAAGACACGTCATTCTTTGTGTCCAACATTTCAATATCCAATTGG
AACCGCGTCTACTTATATGAGCCCATGTTGTGTCACCAAGATCAAGAAGACACTAACGACCGTCATCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis