Browse Element(s) Details


OsAffx.3994.1.S1_at

Description tigr:9632.m03289
TID=OsAffx.3994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3425011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34180OsAffx.14126.1.S1_at10/114+20525809..20529890hypothetical protein
LOC_Os04g34190NANA4+20530951..20535317retrotransposon protein, putative, unclassified
LOC_Os04g34200OsAffx.14127.1.S1_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34200OsAffx.14127.1.S1_x_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34209NANA4+20539184..20539763NA
LOC_Os04g34220NANA4+20541428..20542663hypothetical protein
LOC_Os04g34230OsAffx.14129.1.S1_at11/114+20545911..20548551Zinc finger, C3HC4 type family protein
LOC_Os04g34240OsAffx.26320.1.S1_x_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240OsAffx.26320.1.S1_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240Os.47290.1.S1_at10/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34250OsAffx.3994.1.S1_at11/114+20554733..20557334D-mannose binding lectin family protein, expressed
LOC_Os04g34260OsAffx.447.1.S1_at3/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260Os.46715.1.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260OsAffx.22947.2.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34270Os.49208.1.S1_at11/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34270Os.15523.1.S1_at1/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34280OsAffx.14130.1.S1_at11/114+20577517..20577999expressed protein
LOC_Os04g34290OsAffx.26321.1.S1_at11/114+20581578..20584028D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3994.1.S1_at--282--8051Chr04:20556560..20556584 (25 bp)
GGAGTTGCTCGAGGACTGGCTTACT
LOC_Os04g34250
OsAffx.3994.1.S1_at--882--8111Chr04:20556572..20556596 (25 bp)
GGACTGGCTTACTTGCACGAGAGTT
LOC_Os04g34250
OsAffx.3994.1.S1_at--494--2051Chr04:20556640..20556664 (25 bp)
ACTTCTCGATGATTTGTTCGTTCCA
LOC_Os04g34250
OsAffx.3994.1.S1_at--467--9991Chr04:20556766..20556790 (25 bp)
TAGCGGAGTGGCTGTCACGCCAAAA
LOC_Os04g34250
OsAffx.3994.1.S1_at--536--6791Chr04:20556867..20556891 (25 bp)
GTTATGCTGATCACATCGTTTGTTT
LOC_Os04g34250
OsAffx.3994.1.S1_at--806--6831Chr04:20556884..20556908 (25 bp)
GTTTGTTTCCCTCTTGAAGTTGCAC
LOC_Os04g34250
OsAffx.3994.1.S1_at--37--2831Chr04:20556900..20556924 (25 bp)
AAGTTGCACATAAGCTTCTTGAGGG
LOC_Os04g34250
OsAffx.3994.1.S1_at--901--5951Chr04:20557019..20557043 (25 bp)
GAGAATGAACTTGACCGGCCGACAA
LOC_Os04g34250
OsAffx.3994.1.S1_at--675--7731Chr04:20557051..20557075 (25 bp)
GGTGGTCCAAATTCTTGAAGGTCTA
LOC_Os04g34250
OsAffx.3994.1.S1_at--272--1031Chr04:20557069..20557093 (25 bp)
AGGTCTACTCGAACTTGATTTGCCC
LOC_Os04g34250
OsAffx.3994.1.S1_at--364--591Chr04:20557097..20557121 (25 bp)
ATGCCAAGGCTACTTCAGTCTATAG
LOC_Os04g34250
Target Sequence 
GGAGTTGCTCGAGGACTGGCTTACTTGCACGAGAGTTGTCGAGATTGCATCATACATTGCGATATCAAGCCACAAAACAT
ACTTCTCGATGATTTGTTCGTTCCAAAAATTGCTGACTTTGGAATGGCAAAGCTTCTAGGAAGGGATTTTAGTCGGGTTA
TGACTACAGCAAGAGGAACTATTGGATATCTAGCACCTGAATGGTTTAGCGGAGTGGCTGTCACGCCAAAAGTTGATGTG
TATGCTTATGGAATGGTACTCTTGGAAATTATATCTGGAAAGATGAACTCGCATAGAGAGTCTAATAGTTATGCTGATCA
CATCGTTTGTTTCCCTCTTGAAGTTGCACATAAGCTTCTTGAGGGGGATGTTCTAAGCTTGGTTGATGGCAAATTAAATG
GCGATGTCAATGTCGAGGAGGCTGAAAGAGCTTGCAAGCTTGCATGTTGGTGCATTCAAGAGAATGAACTTGACCGGCCG
ACAATGGGTAAGGTGGTCCAAATTCTTGAAGGTCTACTCGAACTTGATTTGCCCCCGATGCCAAGGCTACTTCAGTCTAT
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis