Browse Element(s) Details


OsAffx.4025.1.S1_at

Description tigr:9632.m03700
TID=OsAffx.4025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161533 copper amine oxidase like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3912011/11copper amine oxidase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39120OsAffx.4025.1.S1_at11/114+23050437..23051089copper amine oxidase, putative
LOC_Os04g39130OsAffx.4026.1.S1_at10/114+23053512..23056261expressed protein
LOC_Os04g39140Os.52258.1.S1_at11/114+23056413..23058360acetyltransferase, GNAT family protein, expressed
LOC_Os04g39150Os.12387.1.S1_at11/114+23059371..23060345Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4025.1.S1_at--865--4831Chr04:23050786..23050810 (25 bp)
GCTCAACGGCAGCAGTAGGGCGGGT
LOC_Os04g39120
OsAffx.4025.1.S1_at--327--951Chr04:23050760..23050784 (25 bp)
AGGAAGCACTGGCTCGCGCTGAGGA
LOC_Os04g39120
OsAffx.4025.1.S1_at--866--5431Chr04:23050728..23050752 (25 bp)
GAACCTATTCATGCACTCGCTGAAG
LOC_Os04g39120
OsAffx.4025.1.S1_at--949--651Chr04:23050718..23050742 (25 bp)
ATGCACTCGCTGAAGCTCGATGAGC
LOC_Os04g39120
OsAffx.4025.1.S1_at--606--531Chr04:23050622..23050646 (25 bp)
ATCCGGTTCCGTGGCAAGTCCCGAG
LOC_Os04g39120
OsAffx.4025.1.S1_at--280--1151Chr04:23050606..23050630 (25 bp)
AGTCCCGAGTCCTCGGCGAGGGCAA
LOC_Os04g39120
OsAffx.4025.1.S1_at--988--1071Chr04:23050588..23050612 (25 bp)
AGGGCAACGGTGTGGTGACTCCTCT
LOC_Os04g39120
OsAffx.4025.1.S1_at--31--2591Chr04:23050583..23050607 (25 bp)
AACGGTGTGGTGACTCCTCTGCATG
LOC_Os04g39120
OsAffx.4025.1.S1_at--410--8671Chr04:23050578..23050602 (25 bp)
TGTGGTGACTCCTCTGCATGTCCCT
LOC_Os04g39120
OsAffx.4025.1.S1_at--1075--9651Chr04:23050510..23050534 (25 bp)
TCAGCTTCGCGCTATTCAAAGACGT
LOC_Os04g39120
OsAffx.4025.1.S1_at--144--4871Chr04:23050500..23050524 (25 bp)
GCTATTCAAAGACGTGGCGTTCAAC
LOC_Os04g39120
Target Sequence 
GCTCAACGGCAGCAGTAGGGCGGGTGAGGAAGCACTGGCTCGCGCTGAGGAGCGGGGCGAACCTATTCATGCACTCGCTG
AAGCTCGATGAGCCGGAAAAGTCCGTCGTCAAGAGCTGGCGGAAGGGCGCCAACCCACTCCCGCCTCGCTGCACCGTGGT
CGTCATCCGGTTCCGTGGCAAGTCCCGAGTCCTCGGCGAGGGCAACGGTGTGGTGACTCCTCTGCATGTCCCTGCCTCCG
GTTACCCGATGATGAGCATGGACGAGCAGACCAGCCTCAGCTTCGCGCTATTCAAAGACGTGGCGTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis