Browse Element(s) Details


OsAffx.4057.1.S1_at

Description tigr:9632.m04064
TID=OsAffx.4057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4253011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42500Os.6817.1.S1_at11/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42500OsAffx.26429.1.S1_at10/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42520Os.7457.1.S1_a_at11/114+24946595..24951654Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os04g42530OsAffx.4057.1.S1_at11/114+24955169..24955534hypothetical protein
LOC_Os04g42540Os.5770.1.S1_at11/114+24955687..24956651expressed protein
LOC_Os04g42550OsAffx.26431.1.S1_at11/114+24959247..24959735hypothetical protein
LOC_Os04g42560OsAffx.28660.1.S1_at1/114+24960766..24961059hypothetical protein
LOC_Os04g42560OsAffx.28660.1.S1_x_at1/114+24960766..24961059hypothetical protein
LOC_Os04g42570OsAffx.4058.1.S1_x_at11/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570OsAffx.23957.2.S1_x_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570Os.55217.1.S1_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42580Os.7025.1.S1_s_at11/114+24968781..24972481carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed
LOC_Os04g42590Os.52657.1.S1_at11/114+24972383..24973850expressed protein
LOC_Os04g42590OsAffx.23890.4.S1_x_at1/114+24972383..24973850expressed protein
LOC_Os04g42600Os.38233.1.S2_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S1_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S2_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4057.1.S1_at--970--6211Chr04:24955447..24955471 (25 bp)
GAGGCGAGACAGTGCATCTGCTCGC
LOC_Os04g42530
OsAffx.4057.1.S1_at--1130--1391Chr04:24955441..24955465 (25 bp)
AGACAGTGCATCTGCTCGCCCACGA
LOC_Os04g42530
OsAffx.4057.1.S1_at--197--6151Chr04:24955367..24955391 (25 bp)
GAGGTCGGCCTCGTGCCAGCAGCTT
LOC_Os04g42530
OsAffx.4057.1.S1_at--487--9411Chr04:24955357..24955381 (25 bp)
TCGTGCCAGCAGCTTCAGCTTGGCG
LOC_Os04g42530
OsAffx.4057.1.S1_at--727--1511Chr04:24955350..24955374 (25 bp)
AGCAGCTTCAGCTTGGCGCCGAGAG
LOC_Os04g42530
OsAffx.4057.1.S1_at--138--3411Chr04:24955348..24955372 (25 bp)
CAGCTTCAGCTTGGCGCCGAGAGCT
LOC_Os04g42530
OsAffx.4057.1.S1_at--946--1211Chr04:24955272..24955296 (25 bp)
AGTTCGCGAACCAGCACCCTTTGGA
LOC_Os04g42530
OsAffx.4057.1.S1_at--171--4951Chr04:24955259..24955283 (25 bp)
GCACCCTTTGGACCCCGGGATGTCG
LOC_Os04g42530
OsAffx.4057.1.S1_at--380--5811Chr04:24955249..24955273 (25 bp)
GACCCCGGGATGTCGAGGTCGGCGT
LOC_Os04g42530
OsAffx.4057.1.S1_at--317--3951Chr04:24955224..24955248 (25 bp)
CGGAGAAGGAGCTCCCGCCCTGCGC
LOC_Os04g42530
OsAffx.4057.1.S1_at--607--4191Chr04:24955207..24955231 (25 bp)
CCCTGCGCCGGCGTGCCAAGATCGG
LOC_Os04g42530
Target Sequence 
GAGGCGAGACAGTGCATCTGCTCGCCCACGACGCACGAGGGCTCCTTCCGGTGCCGGCTCCACCGGCGCGGCGGCATGCC
GAGGTCGGCCTCGTGCCAGCAGCTTCAGCTTGGCGCCGAGAGCTCGCCGCTGCTCTGCTCCGCGGCCGCCATGCGGAGGT
CCGCGTCGCAGCTGCAGTTCGCGAACCAGCACCCTTTGGACCCCGGGATGTCGAGGTCGGCGTCGGAGAAGGAGCTCCCG
CCCTGCGCCGGCGTGCCAAGATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis